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B1KTP9 (B1KTP9_CLOBM) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Alanine racemase EMBL ACA53599.1
EC=5.1.1.1 EMBL ACA53599.1
Gene names
Name:alr EMBL ACA53599.1
Ordered Locus Names:CLK_3463 EMBL ACA53599.1
OrganismClostridium botulinum (strain Loch Maree / Type A3) [Complete proteome] [HAMAP] EMBL ACA53599.1
Taxonomic identifier498214 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium ›

Protein attributes

Sequence length404 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. RuleBase RU004247 SAAS SAAS020622

Sequence similarities

Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
   Molecular functionIsomerase SAAS SAAS020622 RuleBase RU000608 EMBL ACA53599.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processD-alanine biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-UniPathway

   Molecular_functionalanine racemase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B1KTP9 [UniParc].

Last modified April 29, 2008. Version 1.
Checksum: 08F9BC365E395B72

FASTA40445,827
        10         20         30         40         50         60 
MFEHSRPAWI EINLDNLIHN MKEIRRVARS KEIISVVKAD AYGHGALEIA SLLLENGANR 

        70         80         90        100        110        120 
LAVAVLSEAL ELRNNGITAP IIILGYTPLR YDEKTICNNA ETIIKNDLEV SVSSYKYAEQ 

       130        140        150        160        170        180 
LSKKAQQLGK DVKIHVNIDT GMGRLGFLPT EENLEKIYQI SKLPNIIFEG LFSHFSTADE 

       190        200        210        220        230        240 
KNKDYTNEQF KKFLDFYYKL RDKNVKVNIK HIANSAALID LPYTHLDAVR PGIAQYGYYP 

       250        260        270        280        290        300 
SSEVNHKDIN LRPIMTLKTN IVLVKDIKSG QSISYGRKFR TIRNSKIAVL PIGYADGYER 

       310        320        330        340        350        360 
ELSNENNVYK AQVIVNGRRA PIVGRITMDM CMIDVTDIGD VKVGDEVILI GECNDERISV 

       370        380        390        400 
EDIADLLNTI PYEVTSRISK RIPRYYMKDG KIVKISQINK EVNK

« Hide

References

[1]"Analysis of the Neurotoxin Complex Genes in Clostridium botulinum A1-A4 and B1 Strains: BoNT/A3, /Ba4 and /B1 Clusters Are Located within Plasmids."
Smith T.J., Hill K.K., Foley B.T., Detter J.C., Munk A.C., Bruce D.C., Doggett N.A., Smith L.A., Marks J.D., Xie G., Brettin T.S.
PLoS ONE 2:E1271-E1271(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Loch Maree / Type A3.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000962 Genomic DNA. Translation: ACA53599.1.
RefSeqYP_001785612.1. NC_010520.1.

3D structure databases

ProteinModelPortalB1KTP9.
ModBaseSearch...

Protein-protein interaction databases

STRING498214.CLK_3463.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACA53599; ACA53599; CLK_3463.
GeneID6152627.
KEGGcbl:CLK_3463.
PATRIC19385945. VBICloBot822_0593.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0787.
HOGENOMHOG000031444.
KOK01775.
OMAAAEKQHT.
ProtClustDBPRK00053.

Enzyme and pathway databases

BioCycCBOT498214:GH05-8-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB1KTP9_CLOBM
AccessionPrimary (citable) accession number: B1KTP9
Entry history
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: May 1, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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