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B1KSD1 (B1KSD1_CLOBM) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Alanine racemase EMBL ACA54762.1
EC=5.1.1.1 EMBL ACA54762.1
Gene names
Name:alr EMBL ACA54762.1
Ordered Locus Names:CLK_2830 EMBL ACA54762.1
OrganismClostridium botulinum (strain Loch Maree / Type A3) [Complete proteome] [HAMAP] EMBL ACA54762.1
Taxonomic identifier498214 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium ›

Protein attributes

Sequence length386 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. RuleBase RU004247 SAAS SAAS020622

Sequence similarities

Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
   Molecular functionIsomerase SAAS SAAS020622 RuleBase RU000608 EMBL ACA54762.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processD-alanine biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-UniPathway

   Molecular_functionalanine racemase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B1KSD1 [UniParc].

Last modified April 29, 2008. Version 1.
Checksum: 4BD65F0C7A5E5313

FASTA38643,131
        10         20         30         40         50         60 
MFRNLRAVWA EIDLDNLQHN LKQIKKICGN KEIIGVIKAN AYGHGSMEIA PTLLENGVSR 

        70         80         90        100        110        120 
LAVAVLSEAM ELRMSGIKEP IMILGYTPCA LGDMLLDNDI EQSVYSYNDA LELSKIAVLK 

       130        140        150        160        170        180 
RKILKIHIVV DTGMGRIGFL PTKESVEDVY KISKLPNIQI EGVFSHFSSA DELDKDYTLY 

       190        200        210        220        230        240 
QMNNYNEFIN KLEEKNIQVH IKHIANSAAI IDLESTHLDA VRAGIIMYGY YPSNYVLRNN 

       250        260        270        280        290        300 
IKLKPVMSLK TSIVHIKKVS SGEYISYGRT FKTERESIIA TLPIGYADGY NRLLSNKGKV 

       310        320        330        340        350        360 
IVNGKLAPVI GRVCMDQCMI DVTSIENLKV GDVVTIMGEE NGVSYTAEDI ASQIGTISYE 

       370        380 
VICNVNKRVP RVYKKDGKII NVVNYV

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References

[1]"Analysis of the Neurotoxin Complex Genes in Clostridium botulinum A1-A4 and B1 Strains: BoNT/A3, /Ba4 and /B1 Clusters Are Located within Plasmids."
Smith T.J., Hill K.K., Foley B.T., Detter J.C., Munk A.C., Bruce D.C., Doggett N.A., Smith L.A., Marks J.D., Xie G., Brettin T.S.
PLoS ONE 2:E1271-E1271(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Loch Maree / Type A3.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000962 Genomic DNA. Translation: ACA54762.1.
RefSeqYP_001788727.1. NC_010520.1.

3D structure databases

ProteinModelPortalB1KSD1.
ModBaseSearch...

Protein-protein interaction databases

STRING498214.CLK_2830.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACA54762; ACA54762; CLK_2830.
GeneID6152080.
KEGGcbl:CLK_2830.
PATRIC19392270. VBICloBot822_3717.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0787.
HOGENOMHOG000031444.
KOK01775.
OMAPRIPRRY.
ProtClustDBPRK00053.

Enzyme and pathway databases

BioCycCBOT498214:GH05-1175-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB1KSD1_CLOBM
AccessionPrimary (citable) accession number: B1KSD1
Entry history
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: May 1, 2013
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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