B1KQN5 (B1KQN5_SHEWM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ACA86274.1

Gene names

Ordered Locus Names:

Swoo_1990

Organism

Shewanella woodyi (strain ATCC 51908 / MS32) [Complete proteome] [HAMAP] EMBL ACA86274.1

Taxonomic identifier

392500 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella › Shewanella woodyi

Protein attributes

Sequence length	288 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ACA86274.1
Molecular function	Ligase EMBL ACA86274.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 26	26	Potential EMBL ACA86274.1
	Chain	27 – 288	262	Potential EMBL ACA86274.1		PRO_5000317450

Sequences

	Sequence		Length	Mass (Da)
	B1KQN5 [UniParc]. Last modified April 29, 2008. Version 1. Checksum: A2CC2FC3C0E131CB	FASTA	288	32,411
	10 20 30 40 50 60 MKTLNRKWGE LVLFLLLFMS LSSVAGGEDA KLIQLATDAE IEGEITQYLI SEKLDGVRGF 70 80 90 100 110 120 WDGEQLYTRS GLRIVTPAWF THSFPTYPLD GELWMGRGTF EQVSGLVRRK TPLESEWKKV 130 140 150 160 170 180 TFMVFDFPES KLSFGQRYQY YVKALADISP YLSVIEQTQV PNVEQLNAKL ALVVNGGGEG 190 200 210 220 230 240 LMLHKQDALY VAGRNRDLIK LKPFYDAEAT VIAHLPGKGQ FSGLLGALLV ETPEGVRFKI 250 260 270 280 GTGFSLEERR QPPKLGDIIT YKYLGFTQKG TPRFASFLRV RVNSKVTQ

References

[1]

"Complete sequence of Shewanella woodyi ATCC 51908." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Lykidis A., Zhao J.-S., Richardson P. Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51908 / MS32.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000961 Genomic DNA. Translation: ACA86274.1.
RefSeq	YP_001760369.1. NC_010506.1.
3D structure databases
ProteinModelPortal	B1KQN5.
ModBase	Search...
Protein-protein interaction databases
STRING	392500.Swoo_1990.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACA86274; ACA86274; Swoo_1990.
GeneID	6116253.
KEGG	swd:Swoo_1990.
PATRIC	23606383. VBISheWoo126588_2059.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000293070.
KO	K01971.
OMA	VRGYWDG.
ProtClustDB	PRK09125.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B1KQN5_SHEWM

Accession

Primary (citable) accession number: B1KQN5

Entry history

Integrated into UniProtKB/TrEMBL:	April 29, 2008
Last sequence update:	April 29, 2008
Last modified:	May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)