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B1KQN5

- B1KQN5_SHEWM

UniProt

B1KQN5 - B1KQN5_SHEWM

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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Swoo_1990

Organism
Shewanella woodyi (strain ATCC 51908 / MS32)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSWOO392500:GI2C-2036-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Swoo_1990Imported
OrganismiShewanella woodyi (strain ATCC 51908 / MS32)Imported
Taxonomic identifieri392500 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000002168: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2626 PotentialImportedAdd
BLAST
Chaini27 – 288262 PotentialImportedPRO_5000317450Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi392500.Swoo_1990.

Structurei

3D structure databases

ProteinModelPortaliB1KQN5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiGKGQFEN.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

B1KQN5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKTLNRKWGE LVLFLLLFMS LSSVAGGEDA KLIQLATDAE IEGEITQYLI
60 70 80 90 100
SEKLDGVRGF WDGEQLYTRS GLRIVTPAWF THSFPTYPLD GELWMGRGTF
110 120 130 140 150
EQVSGLVRRK TPLESEWKKV TFMVFDFPES KLSFGQRYQY YVKALADISP
160 170 180 190 200
YLSVIEQTQV PNVEQLNAKL ALVVNGGGEG LMLHKQDALY VAGRNRDLIK
210 220 230 240 250
LKPFYDAEAT VIAHLPGKGQ FSGLLGALLV ETPEGVRFKI GTGFSLEERR
260 270 280
QPPKLGDIIT YKYLGFTQKG TPRFASFLRV RVNSKVTQ
Length:288
Mass (Da):32,411
Last modified:April 29, 2008 - v1
Checksum:iA2CC2FC3C0E131CB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000961 Genomic DNA. Translation: ACA86274.1.
RefSeqiWP_012324620.1. NC_010506.1.
YP_001760369.1. NC_010506.1.

Genome annotation databases

EnsemblBacteriaiACA86274; ACA86274; Swoo_1990.
GeneIDi6116253.
KEGGiswd:Swoo_1990.
PATRICi23606383. VBISheWoo126588_2059.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000961 Genomic DNA. Translation: ACA86274.1 .
RefSeqi WP_012324620.1. NC_010506.1.
YP_001760369.1. NC_010506.1.

3D structure databases

ProteinModelPortali B1KQN5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 392500.Swoo_1990.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACA86274 ; ACA86274 ; Swoo_1990 .
GeneIDi 6116253.
KEGGi swd:Swoo_1990.
PATRICi 23606383. VBISheWoo126588_2059.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000293070.
KOi K01971.
OMAi GKGQFEN.
OrthoDBi EOG60919Q.

Enzyme and pathway databases

BioCyci SWOO392500:GI2C-2036-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51908 / MS32Imported.

Entry informationi

Entry nameiB1KQN5_SHEWM
AccessioniPrimary (citable) accession number: B1KQN5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: October 29, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3