Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

B1KQN5

- B1KQN5_SHEWM

UniProt

B1KQN5 - B1KQN5_SHEWM

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Swoo_1990

Organism
Shewanella woodyi (strain ATCC 51908 / MS32)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (29 Apr 2008)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSWOO392500:GI2C-2036-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Swoo_1990Imported
    OrganismiShewanella woodyi (strain ATCC 51908 / MS32)Imported
    Taxonomic identifieri392500 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    ProteomesiUP000002168: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2626 PotentialImportedAdd
    BLAST
    Chaini27 – 288262 PotentialImportedPRO_5000317450Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi392500.Swoo_1990.

    Structurei

    3D structure databases

    ProteinModelPortaliB1KQN5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000293070.
    KOiK01971.
    OMAiGKGQFEN.
    OrthoDBiEOG60919Q.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    B1KQN5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKTLNRKWGE LVLFLLLFMS LSSVAGGEDA KLIQLATDAE IEGEITQYLI    50
    SEKLDGVRGF WDGEQLYTRS GLRIVTPAWF THSFPTYPLD GELWMGRGTF 100
    EQVSGLVRRK TPLESEWKKV TFMVFDFPES KLSFGQRYQY YVKALADISP 150
    YLSVIEQTQV PNVEQLNAKL ALVVNGGGEG LMLHKQDALY VAGRNRDLIK 200
    LKPFYDAEAT VIAHLPGKGQ FSGLLGALLV ETPEGVRFKI GTGFSLEERR 250
    QPPKLGDIIT YKYLGFTQKG TPRFASFLRV RVNSKVTQ 288
    Length:288
    Mass (Da):32,411
    Last modified:April 29, 2008 - v1
    Checksum:iA2CC2FC3C0E131CB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000961 Genomic DNA. Translation: ACA86274.1.
    RefSeqiWP_012324620.1. NC_010506.1.
    YP_001760369.1. NC_010506.1.

    Genome annotation databases

    EnsemblBacteriaiACA86274; ACA86274; Swoo_1990.
    GeneIDi6116253.
    KEGGiswd:Swoo_1990.
    PATRICi23606383. VBISheWoo126588_2059.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000961 Genomic DNA. Translation: ACA86274.1 .
    RefSeqi WP_012324620.1. NC_010506.1.
    YP_001760369.1. NC_010506.1.

    3D structure databases

    ProteinModelPortali B1KQN5.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 392500.Swoo_1990.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACA86274 ; ACA86274 ; Swoo_1990 .
    GeneIDi 6116253.
    KEGGi swd:Swoo_1990.
    PATRICi 23606383. VBISheWoo126588_2059.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000293070.
    KOi K01971.
    OMAi GKGQFEN.
    OrthoDBi EOG60919Q.

    Enzyme and pathway databases

    BioCyci SWOO392500:GI2C-2036-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 51908 / MS32Imported.

    Entry informationi

    Entry nameiB1KQN5_SHEWM
    AccessioniPrimary (citable) accession number: B1KQN5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 29, 2008
    Last sequence update: April 29, 2008
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3