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B1KP42 (RLMF_SHEWM) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribosomal RNA large subunit methyltransferase F
EC=2.1.1.181
Alternative name(s):
23S rRNA mA1618 methyltransferase
rRNA adenine N-6-methyltransferase
Gene names
Name:rlmF
Ordered Locus Names:Swoo_4824
OrganismShewanella woodyi (strain ATCC 51908 / MS32) [Complete proteome] [HAMAP]
Taxonomic identifier392500 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length382 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Specifically methylates the adenine in position 1618 of 23S rRNA By similarity. HAMAP MF_01848

Catalytic activity

S-adenosyl-L-methionine + adenine(1618) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(1618) in 23S rRNA. HAMAP MF_01848

Subcellular location

Cytoplasm Potential HAMAP MF_01848.

Sequence similarities

Belongs to the methyltransferase superfamily. METTL16/rlmF family.

Ontologies

Keywords
   Biological processrRNA processing
   Cellular componentCytoplasm
   LigandS-adenosyl-L-methionine
   Molecular functionMethyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionrRNA (adenine-N6-)-methyltransferase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 382382Ribosomal RNA large subunit methyltransferase F HAMAP MF_01848
PRO_0000349966

Sequences

Sequence LengthMass (Da)Tools
B1KP42 [UniParc].

Last modified April 29, 2008. Version 1.
Checksum: FBC35B57C6769C31

FASTA38242,595
        10         20         30         40         50         60 
MTKPSSKASR KPVTKSGRNS KRSRSGSSKG DAQVARAINN QKPGLHPRNL HRDGYDFDKL 

        70         80         90        100        110        120 
TKVSPVLTPY VQPNPYGNLS IDFADPQAVK ALNAAILKLD YQIDNWDIPE GFLCPPIPGR 

       130        140        150        160        170        180 
VDYLHYIYDL LAGVEEFENK SETEMEGQNV PPVNSHTIKP KKMKIKALDI GTGANAIYPL 

       190        200        210        220        230        240 
LGIQTYGWRF VASDVDPISL ANVKAIVEGN NCLLGKLEVR LQNDHQKVFS GIIKPDDRFD 

       250        260        270        280        290        300 
ITLCNPPFHA SLKEASEGSQ RKLKNLAENR ASKGHKLEPK APKDKSQLNF GGQKAELWCE 

       310        320        330        340        350        360 
GGEKQFLHNM ICESKVFATQ CLWFTSLVSK KENLEACYTE LKRVGAITVK TIDMAQGNKL 

       370        380 
TRVLAWSFLT PSQRGLWAKY RS

« Hide

References

[1]"Complete sequence of Shewanella woodyi ATCC 51908."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Lykidis A., Zhao J.-S., Richardson P.
Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 51908 / MS32.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000961 Genomic DNA. Translation: ACA89073.1.
RefSeqYP_001763168.1. NC_010506.1.

3D structure databases

ProteinModelPortalB1KP42.
ModBaseSearch...

Protein-protein interaction databases

STRINGB1KP42.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6119201.
GenomeReviewsGene locus Swoo_4824 in contig CP000961_GR.
KEGGswd:Swoo_4824.
PATRIC23612409. VBISheWoo126588_4963.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG747880.
OMAWSFVGSD.
ProtClustDBPRK11727.

Family and domain databases

HAMAPMF_01848. 23SrRNA_methyltr_F.
[Tree]
InterProIPR016909. rRNA_lsu_methyltransferase_F.
IPR010286. SAM-Mtase_prd.
[Graphical view]
KOK06970.
PANTHERPTHR13393. DUF890. 1 hit.
PfamPF05971. Methyltransf_10. 2 hits.
[Graphical view]
PIRSFPIRSF029038. Mtase_YbiN_prd. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRLMF_SHEWM
AccessionPrimary (citable) accession number: B1KP42
Entry history
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: April 29, 2008
Last modified: January 25, 2012
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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