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B1KN32 (B1KN32_SHEWM) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Swoo_4739 EMBL ACA88989.1
OrganismShewanella woodyi (strain ATCC 51908 / MS32) [Complete proteome] [HAMAP] EMBL ACA88989.1
Taxonomic identifier392500 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length464 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
B1KN32 [UniParc].

Last modified April 29, 2008. Version 1.
Checksum: FAEBB2155FC86A3F

FASTA46452,582
        10         20         30         40         50         60 
MPLHSKDTVR DDLLDDIYSS ADLALSMPKY KMPEQEHDSR HVYQVIHDEL MMDGNSRQNL 

        70         80         90        100        110        120 
ATFCQTWVED EVHKLMDECI DKNMIDKDEY PQTAELEARC VHMLADLWHS PDAENTLGCS 

       130        140        150        160        170        180 
TTGSSEAAML GGMALKWAWR EKMRKLGKPT DKPNLICGPV QVCWHKFARY WDIELREIPM 

       190        200        210        220        230        240 
EGDRLIMTPE EVIKRCDENT IGVVPTLGVT FTCQYEPVKA VHEALDQLQK DTGLDIPMHI 

       250        260        270        280        290        300 
DAASGGFLAP FCDPDLEWDF RLPRVKSINA SGHKFGLSPL GVGWVIWRDA SALDKDLIFN 

       310        320        330        340        350        360 
VNYLGGNMPT FALNFSRPGG QIVAQYYNFL RLGREGYRKI HQACYDTAIY LSGEIEKMGM 

       370        380        390        400        410        420 
FDIIYDGQGG IPAMSWSLKE GVEPGFNLFD LSDRIRSRGW QIAAYAMPPK REDLVIMRIL 

       430        440        450        460 
VRHGFSRDQA DLLVADLQHC VDFFAKHPIS HSSDEAESAG FNHG 

« Hide

References

[1]"Complete sequence of Shewanella woodyi ATCC 51908."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Lykidis A., Zhao J.-S., Richardson P.
Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 51908 / MS32.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000961 Genomic DNA. Translation: ACA88989.1.
RefSeqYP_001763084.1. NC_010506.1.

3D structure databases

ProteinModelPortalB1KN32.
SMRB1KN32. Positions 31-448.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING392500.Swoo_4739.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACA88989; ACA88989; Swoo_4739.
GeneID6119116.
KEGGswd:Swoo_4739.
PATRIC23612235. VBISheWoo126588_4876.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000070228.
KOK01580.
OMAPTFQINF.
OrthoDBEOG6TFCPW.

Enzyme and pathway databases

BioCycSWOO392500:GI2C-4900-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB1KN32_SHEWM
AccessionPrimary (citable) accession number: B1KN32
Entry history
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: May 14, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)