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Protein
Submitted name:

Pyridoxal-dependent decarboxylase

Gene

Swoo_3135

Organism
Shewanella woodyi (strain ATCC 51908 / MS32)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciSWOO392500:GI2C-3237-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-dependent decarboxylaseImported
Gene namesi
Ordered Locus Names:Swoo_3135Imported
OrganismiShewanella woodyi (strain ATCC 51908 / MS32)Imported
Taxonomic identifieri392500 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000002168 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi392500.Swoo_3135.

Structurei

3D structure databases

ProteinModelPortaliB1KMM8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiEGTAMIS.
OrthoDBiEOG6MSRZP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

B1KMM8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSMTQRRATA SEEALLRIFT VPEAPDSTLS VIEQNISQNL MGFLQESVVA
60 70 80 90 100
VEKPLSEIER DFQQHQIPSA PQFVSDYADD MMKTLVAHSV HTSAPSFIGH
110 120 130 140 150
MTSALPYFVL PLSKMMVGLN QNLVKIETSK AFTPLERQVL GMMHHLIYSE
160 170 180 190 200
SDEFYQSWMH SANYSLGAFC SGGTVANITA LWTARNQLLK ADGDFKGVSA
210 220 230 240 250
QGLVKGLRHY GYDDLAILVS QRGHYSLAKT ADLLGIGREN IIQIPTSSDN
260 270 280 290 300
KVDVSKMREM AAKLNDDNIK VMAIVGVAGT TETGNIDPLD ELATLASELN
310 320 330 340 350
CHFHVDAAWG GASLLSNKYR HLLKGIERAD SVTIDAHKQM YVPMGAGMVI
360 370 380 390 400
FKDPAFANAI KHHAEYILRK GSKDLGSQTL EGSRPGMAML VHACLQVIGR
410 420 430 440 450
DGYEILINNS LEKARYFADL IKQHQDFELV SEPELCLLTY RYVPKSVQMA
460 470 480 490 500
MAQARENKDV QSLIEFNRLL DGLTKFVQKR QREQGTSFVS RTRINPEAGI
510 520 530 540 550
VDIKSVVFRV VLANPLTTHE ILAQVLSEQS EIANQDNKFL PQLLQLANLK

N
Length:551
Mass (Da):61,167
Last modified:April 29, 2008 - v1
Checksum:i94F2955B9712082B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000961 Genomic DNA. Translation: ACA87406.1.

Genome annotation databases

EnsemblBacteriaiACA87406; ACA87406; Swoo_3135.
KEGGiswd:Swoo_3135.
PATRICi23608829. VBISheWoo126588_3227.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000961 Genomic DNA. Translation: ACA87406.1.

3D structure databases

ProteinModelPortaliB1KMM8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi392500.Swoo_3135.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACA87406; ACA87406; Swoo_3135.
KEGGiswd:Swoo_3135.
PATRICi23608829. VBISheWoo126588_3227.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiEGTAMIS.
OrthoDBiEOG6MSRZP.

Enzyme and pathway databases

BioCyciSWOO392500:GI2C-3237-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51908 / MS32Imported.

Entry informationi

Entry nameiB1KMM8_SHEWM
AccessioniPrimary (citable) accession number: B1KMM8
Entry historyi
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: July 22, 2015
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.