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B1KMM8 (B1KMM8_SHEWM) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Swoo_3135 EMBL ACA87406.1
OrganismShewanella woodyi (strain ATCC 51908 / MS32) [Complete proteome] [HAMAP] EMBL ACA87406.1
Taxonomic identifier392500 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length551 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
B1KMM8 [UniParc].

Last modified April 29, 2008. Version 1.
Checksum: 94F2955B9712082B

FASTA55161,167
        10         20         30         40         50         60 
MSMTQRRATA SEEALLRIFT VPEAPDSTLS VIEQNISQNL MGFLQESVVA VEKPLSEIER 

        70         80         90        100        110        120 
DFQQHQIPSA PQFVSDYADD MMKTLVAHSV HTSAPSFIGH MTSALPYFVL PLSKMMVGLN 

       130        140        150        160        170        180 
QNLVKIETSK AFTPLERQVL GMMHHLIYSE SDEFYQSWMH SANYSLGAFC SGGTVANITA 

       190        200        210        220        230        240 
LWTARNQLLK ADGDFKGVSA QGLVKGLRHY GYDDLAILVS QRGHYSLAKT ADLLGIGREN 

       250        260        270        280        290        300 
IIQIPTSSDN KVDVSKMREM AAKLNDDNIK VMAIVGVAGT TETGNIDPLD ELATLASELN 

       310        320        330        340        350        360 
CHFHVDAAWG GASLLSNKYR HLLKGIERAD SVTIDAHKQM YVPMGAGMVI FKDPAFANAI 

       370        380        390        400        410        420 
KHHAEYILRK GSKDLGSQTL EGSRPGMAML VHACLQVIGR DGYEILINNS LEKARYFADL 

       430        440        450        460        470        480 
IKQHQDFELV SEPELCLLTY RYVPKSVQMA MAQARENKDV QSLIEFNRLL DGLTKFVQKR 

       490        500        510        520        530        540 
QREQGTSFVS RTRINPEAGI VDIKSVVFRV VLANPLTTHE ILAQVLSEQS EIANQDNKFL 

       550 
PQLLQLANLK N 

« Hide

References

[1]"Complete sequence of Shewanella woodyi ATCC 51908."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Lykidis A., Zhao J.-S., Richardson P.
Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 51908 / MS32.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000961 Genomic DNA. Translation: ACA87406.1.
RefSeqYP_001761501.1. NC_010506.1.

3D structure databases

ProteinModelPortalB1KMM8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING392500.Swoo_3135.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACA87406; ACA87406; Swoo_3135.
GeneID6117454.
KEGGswd:Swoo_3135.
PATRIC23608829. VBISheWoo126588_3227.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000282553.
KOK01580.
OMAARYFRQP.
OrthoDBEOG6MSRZP.
ProtClustDBCLSK874231.

Enzyme and pathway databases

BioCycSWOO392500:GI2C-3237-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB1KMM8_SHEWM
AccessionPrimary (citable) accession number: B1KMM8
Entry history
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: November 13, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)