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B1KMM8

- B1KMM8_SHEWM

UniProt

B1KMM8 - B1KMM8_SHEWM

Protein
Submitted name:

Pyridoxal-dependent decarboxylase

Gene

Swoo_3135

Organism
Shewanella woodyi (strain ATCC 51908 / MS32)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 42 (01 Oct 2014)
      Sequence version 1 (29 Apr 2008)
      Previous versions | rss
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    Functioni

    Cofactori

    Pyridoxal phosphate.UniRule annotation

    GO - Molecular functioni

    1. carboxy-lyase activity Source: InterPro
    2. pyridoxal phosphate binding Source: InterPro

    GO - Biological processi

    1. carboxylic acid metabolic process Source: InterPro

    Keywords - Molecular functioni

    LyaseUniRule annotation

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotation

    Enzyme and pathway databases

    BioCyciSWOO392500:GI2C-3237-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Pyridoxal-dependent decarboxylaseImported
    Gene namesi
    Ordered Locus Names:Swoo_3135Imported
    OrganismiShewanella woodyi (strain ATCC 51908 / MS32)Imported
    Taxonomic identifieri392500 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    ProteomesiUP000002168: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi392500.Swoo_3135.

    Structurei

    3D structure databases

    ProteinModelPortaliB1KMM8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the group II decarboxylase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0076.
    HOGENOMiHOG000282553.
    KOiK01580.
    OMAiARYFRQP.
    OrthoDBiEOG6MSRZP.

    Family and domain databases

    Gene3Di3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProiIPR022517. Asp_decarboxylase_pyridox.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view]
    PfamiPF00282. Pyridoxal_deC. 1 hit.
    [Graphical view]
    SUPFAMiSSF53383. SSF53383. 1 hit.
    TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B1KMM8-1 [UniParc]FASTAAdd to Basket

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    MSMTQRRATA SEEALLRIFT VPEAPDSTLS VIEQNISQNL MGFLQESVVA    50
    VEKPLSEIER DFQQHQIPSA PQFVSDYADD MMKTLVAHSV HTSAPSFIGH 100
    MTSALPYFVL PLSKMMVGLN QNLVKIETSK AFTPLERQVL GMMHHLIYSE 150
    SDEFYQSWMH SANYSLGAFC SGGTVANITA LWTARNQLLK ADGDFKGVSA 200
    QGLVKGLRHY GYDDLAILVS QRGHYSLAKT ADLLGIGREN IIQIPTSSDN 250
    KVDVSKMREM AAKLNDDNIK VMAIVGVAGT TETGNIDPLD ELATLASELN 300
    CHFHVDAAWG GASLLSNKYR HLLKGIERAD SVTIDAHKQM YVPMGAGMVI 350
    FKDPAFANAI KHHAEYILRK GSKDLGSQTL EGSRPGMAML VHACLQVIGR 400
    DGYEILINNS LEKARYFADL IKQHQDFELV SEPELCLLTY RYVPKSVQMA 450
    MAQARENKDV QSLIEFNRLL DGLTKFVQKR QREQGTSFVS RTRINPEAGI 500
    VDIKSVVFRV VLANPLTTHE ILAQVLSEQS EIANQDNKFL PQLLQLANLK 550
    N 551
    Length:551
    Mass (Da):61,167
    Last modified:April 29, 2008 - v1
    Checksum:i94F2955B9712082B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000961 Genomic DNA. Translation: ACA87406.1.
    RefSeqiWP_012325742.1. NC_010506.1.
    YP_001761501.1. NC_010506.1.

    Genome annotation databases

    EnsemblBacteriaiACA87406; ACA87406; Swoo_3135.
    GeneIDi6117454.
    KEGGiswd:Swoo_3135.
    PATRICi23608829. VBISheWoo126588_3227.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000961 Genomic DNA. Translation: ACA87406.1 .
    RefSeqi WP_012325742.1. NC_010506.1.
    YP_001761501.1. NC_010506.1.

    3D structure databases

    ProteinModelPortali B1KMM8.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 392500.Swoo_3135.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACA87406 ; ACA87406 ; Swoo_3135 .
    GeneIDi 6117454.
    KEGGi swd:Swoo_3135.
    PATRICi 23608829. VBISheWoo126588_3227.

    Phylogenomic databases

    eggNOGi COG0076.
    HOGENOMi HOG000282553.
    KOi K01580.
    OMAi ARYFRQP.
    OrthoDBi EOG6MSRZP.

    Enzyme and pathway databases

    BioCyci SWOO392500:GI2C-3237-MONOMER.

    Family and domain databases

    Gene3Di 3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProi IPR022517. Asp_decarboxylase_pyridox.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view ]
    Pfami PF00282. Pyridoxal_deC. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53383. SSF53383. 1 hit.
    TIGRFAMsi TIGR03799. NOD_PanD_pyr. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 51908 / MS32Imported.

    Entry informationi

    Entry nameiB1KMM8_SHEWM
    AccessioniPrimary (citable) accession number: B1KMM8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 29, 2008
    Last sequence update: April 29, 2008
    Last modified: October 1, 2014
    This is version 42 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3