B1KI62 (B1KI62_SHEWM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL ACA85540.1

Gene names

Ordered Locus Names:

Swoo_1248

Organism

Shewanella woodyi (strain ATCC 51908 / MS32) [Complete proteome] [HAMAP] EMBL ACA85540.1

Taxonomic identifier

392500 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	610 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ACA85540.1
Technical term	Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 23	23	Potential EMBL ACA85540.1
	Chain	24 – 610	587	Potential EMBL ACA85540.1		PRO_5000316761

Sequences

	Sequence		Length	Mass (Da)
	B1KI62 [UniParc]. Last modified April 29, 2008. Version 1. Checksum: 3625E8737EB08DC3	FASTA	610	69,119
	10 20 30 40 50 60 MKSIVPLVVI LSCLFFTSFS KATQVIHLSP SAQDMTPVLA KALASVTESE LKIVLDKGIY 70 80 90 100 110 120 HFKPDYAKSG YRVITNHGNG VKKVIFSLEG FDSVEIEGNG AELVFHGQLA PFQFYRNNKV 130 140 150 160 170 180 RVSDLSIDWD IPFTFTSEVL AVNSELGWID IKPLPGNSYQ VKNGQILFPN VDGFNYEYLG 190 200 210 220 230 240 SSLAFEPVQK RVVHGAWDFK SKPDRVQKRE DGVLRIHEKL KYYPPVGSWL NSKGDRHNDR 250 260 270 280 290 300 YAPAFQVRNS KNIRFDGVKV HHALGMGFLF ERSENIEILN SGVLLKDKQN GTRVISSTAD 310 320 330 340 350 360 ATHFANCKGD ILIENSRFEN MLDDGVNVHG TYVMVESLLS HKSVRVELKH FEQQGFEFAA 370 380 390 400 410 420 KGDEVWFVHQ PDVHRRTVNE VTGVNRINER FIELSFKDSL PSQLQVGDLL ENKTWNPNFT 430 440 450 460 470 480 MRGNSIGDHR ARSIVLKTPK EILIEDNHLY SMMSCIFMRG ESFYWYESGA VEDVTIRNNV 490 500 510 520 530 540 FENCAYSGKE HAVMYITPRL GKSFDSTQFF DSNIRFINNS VTTFDNRIVW ADRVDGLIIE 550 560 570 580 590 600 GNKITKIVDG AKPPLHPNSP VFEFTNSKNV ELKGNRYIGD KKLLIKADSR SSETLKYDGS 610 MGAKIEADKE

References

[1]

"Complete sequence of Shewanella woodyi ATCC 51908." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Lykidis A., Zhao J.-S., Richardson P. Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51908 / MS32.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000961 Genomic DNA. Translation: ACA85540.1.
RefSeq	YP_001759635.1. NC_010506.1.
3D structure databases
ProteinModelPortal	B1KI62.
ModBase	Search...
Protein-protein interaction databases
STRING	B1KI62.
Protein family/group databases
CAZy	GH110. Glycoside Hydrolase Family 110.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6115483.
GenomeReviews	Gene locus Swoo_1248 in contig CP000961_GR.
KEGG	swd:Swoo_1248.
PATRIC	23604797. VBISheWoo126588_1294.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	ATHFANC.
ProtClustDB	CLSK823424.
Family and domain databases
InterPro	IPR006626. PbH1. IPR012334. Pectin_lyas_fold. IPR011050. Pectin_lyase_fold/virulence. [Graphical view]
Gene3D	G3DSA:2.160.20.10. Pectin_lyas_fold. 3 hits.
SMART	SM00710. PbH1. 6 hits. [Graphical view]
SUPFAM	SSF51126. Pectin_lyas_like. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B1KI62_SHEWM

Accession

Primary (citable) accession number: B1KI62

Entry history

Integrated into UniProtKB/TrEMBL:	April 29, 2008
Last sequence update:	April 29, 2008
Last modified:	December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)