B1KI11 (B1KI11_SHEWM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Choline dehydrogenase EMBL ACA85489.1
EC=1.1.99.1 EMBL ACA85489.1

Gene names

Ordered Locus Names:

Swoo_1196

Organism

Shewanella woodyi (strain ATCC 51908 / MS32) [Complete proteome] [HAMAP] EMBL ACA85489.1

Taxonomic identifier

392500 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	565 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine By similarity. SAAS SAAS007867
Catalytic activity	Choline + acceptor = betaine aldehyde + reduced acceptor. SAAS SAAS007867
Cofactor	FAD By similarity. SAAS SAAS007867
Pathway	Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. SAAS SAAS007867

Ontologies

Keywords
Ligand	FAD SAAS SAAS011533 Flavoprotein SAAS SAAS011533
Molecular function	Oxidoreductase SAAS SAAS007867 EMBL ACA85489.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycine betaine biosynthetic process from choline Inferred from electronic annotation. Source: InterPro
Molecular function	choline dehydrogenase activity Inferred from electronic annotation. Source: EC flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1KI11 [UniParc]. Last modified April 29, 2008. Version 1. Checksum: 73EFECCE5398D64D	FASTA	565	62,130
	10 20 30 40 50 60 MTQSTTDYDY IIVGAGSAGC VLANRLSKDP SNKVLLLETG GSDKSIFIQM PTALSIPMNT 70 80 90 100 110 120 KKYAWQFETQ AEPYLDNRRM HCPRGKVLGG SSSINGMVYV RGHARDFDEW QQEGAKDWDY 130 140 150 160 170 180 AHCLPYFKKA ESWAFGEDEY RGVDGPLGVN NGNNMKNPLY QAFVDAGVDA GYLATNDYNG 190 200 210 220 230 240 AQQEGFGPMH MTVKNGVRWS SSNAYLRPAM KRDNLTVITH ALVHKVLFST NEGEGKKAVG 250 260 270 280 290 300 VRFERKGQHI EVSASKEVVL SAGSIGSPHI LQLSGIGAAQ TLADAGIEQV HELPGVGENL 310 320 330 340 350 360 QDHLEFYFQF KCLKPISLNG KLDPLNKLFI GTRWILNKSG LGATNHFESC GFIRSKAGLE 370 380 390 400 410 420 WPDLQYHFLP AAMRYDGKEA FAGHGFQVHI GHNKPKSRGS VKVVSNDPHT PPNILFNYLS 430 440 450 460 470 480 HSDDIEGFRA CVRLTREIIN QPALDQYRGE EIQPGISVQT DEEIDSFVRR SVESAYHPSC 490 500 510 520 530 540 SCKMGEDAMA VVDSQTRVHG LQGLRVVDSS IFPTIPNGNL NSPTIMLAER AADLILGNTP 550 560 LAPSAASVTI SNNWQTQQRH SSAAR

References

[1]

"Complete sequence of Shewanella woodyi ATCC 51908." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Lykidis A., Zhao J.-S., Richardson P. Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51908 / MS32.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000961 Genomic DNA. Translation: ACA85489.1.
RefSeq	YP_001759584.1. NC_010506.1.
3D structure databases
ProteinModelPortal	B1KI11.
ModBase	Search...
Protein-protein interaction databases
STRING	B1KI11.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6115431.
GenomeReviews	Gene locus Swoo_1196 in contig CP000961_GR.
KEGG	swd:Swoo_1196.
PATRIC	23604689. VBISheWoo126588_1240.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG734713.
OMA	HMTVKNG.
ProtClustDB	PRK02106.
Family and domain databases
InterPro	IPR011533. Choline_dehydrogenase. IPR012132. GMC_OxRdtase. IPR000172. GMC_OxRdtase_N. IPR007867. GMC_OxRtase_C. [Graphical view]
KO	K00108.
Pfam	PF05199. GMC_oxred_C. 1 hit. PF00732. GMC_oxred_N. 1 hit. [Graphical view]
PIRSF	PIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMs	TIGR01810. BetA. 1 hit.
PROSITE	PS00623. GMC_OXRED_1. 1 hit. PS00624. GMC_OXRED_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1KI11_SHEWM

Accession

Primary (citable) accession number: B1KI11

Entry history

Integrated into UniProtKB/TrEMBL:	April 29, 2008
Last sequence update:	April 29, 2008
Last modified:	January 25, 2012
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)