B1KFE5 (B1KFE5_SHEWM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
4-aminobutyrate aminotransferase EMBL ACA88120.1
EC=2.6.1.22 EMBL ACA88120.1

Gene names

Ordered Locus Names:

Swoo_3862

Organism

Shewanella woodyi (strain ATCC 51908 / MS32) [Complete proteome] [HAMAP] EMBL ACA88120.1

Taxonomic identifier

392500 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella › Shewanella woodyi

Protein attributes

Sequence length	427 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003560

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU003560
Molecular function	Aminotransferase EMBL ACA88120.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	gamma-aminobutyric acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	(S)-3-amino-2-methylpropionate transaminase activity Inferred from electronic annotation. Source: EC 4-aminobutyrate transaminase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1KFE5 [UniParc]. Last modified April 29, 2008. Version 1. Checksum: E4C79E95D91BD206	FASTA	427	45,410
	10 20 30 40 50 60 MTNSSLQARK VKAIARGQGN AYPVYVERAK NAELWDVEGK RYIDFGTGIA VCNTGHSHPK 70 80 90 100 110 120 IVAAVKAQLD NFSHTCVMVN PYESAVELAE KLTEIAPGES DKKAIFVTTG AEAVENCVKI 130 140 150 160 170 180 ARAHTGRRGV IAFNGGFHGR TNLTMALTGK ITPYKHQFGP FAGDVFHAPF PIDYHNISVK 190 200 210 220 230 240 HSLDALNNLF KVDIAPCDVA AIIVEPVQGE GGFYAAPAEF LQALRSLCDD HGIVLIADEI 250 260 270 280 290 300 QTGFGRTGKM FSFEHAGVEP DLITMAKGIA GGFPIAAVVG KSEIMDAPLP GGLGGTYGGS 310 320 330 340 350 360 PVACVAALTV LDVIKEEGLV ERAAQIGAIF NERLTALQAE YPQLIGEVRN QGAMIAMELV 370 380 390 400 410 420 SNGDCEQANT ALTQAIIAKA AKYGLILLAC GFYGNVIRFL PALTISDELI NEGLDQFVRL FGEAANC

References

[1]

"Complete sequence of Shewanella woodyi ATCC 51908." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Lykidis A., Zhao J.-S., Richardson P. Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51908 / MS32.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000961 Genomic DNA. Translation: ACA88120.1.
RefSeq	YP_001762215.1. NC_010506.1.
3D structure databases
ProteinModelPortal	B1KFE5.
SMR	B1KFE5. Positions 2-424.
ModBase	Search...
Protein-protein interaction databases
STRING	392500.Swoo_3862.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACA88120; ACA88120; Swoo_3862.
GeneID	6118211.
KEGG	swd:Swoo_3862.
PATRIC	23610389. VBISheWoo126588_3980.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0160.
HOGENOM	HOG000020206.
KO	K07250.
OMA	SDVFHAP.
ProtClustDB	CLSK938270.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR004632. 4NH2But_aminotransferase_bac. IPR005814. Aminotrans_3. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
PANTHER	PTHR11986. PTHR11986. 1 hit.
Pfam	PF00202. Aminotran_3. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR00700. GABAtrnsam. 1 hit.
PROSITE	PS00600. AA_TRANSFER_CLASS_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1KFE5_SHEWM

Accession

Primary (citable) accession number: B1KFE5

Entry history

Integrated into UniProtKB/TrEMBL:	April 29, 2008
Last sequence update:	April 29, 2008
Last modified:	May 1, 2013
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)