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Protein

Pseudouridine synthase

Gene

Swoo_3722

Organism
Shewanella woodyi (strain ATCC 51908 / MS32)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil.UniRule annotation

Catalytic activityi

RNA uridine = RNA pseudouridine.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosidaseImported, Hydrolase, IsomeraseUniRule annotationSAAS annotation, RNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciSWOO392500:G1GBD-4107-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
Gene namesi
Ordered Locus Names:Swoo_3722Imported
OrganismiShewanella woodyi (strain ATCC 51908 / MS32)Imported
Taxonomic identifieri392500 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000002168 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi392500.Swoo_3722

Structurei

3D structure databases

ProteinModelPortaliB1KDY0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini18 – 91S4 RNA-bindingInterPro annotationAdd BLAST74

Sequence similaritiesi

Belongs to the pseudouridine synthase RluA family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105C34 Bacteria
COG0564 LUCA
HOGENOMiHOG000275919
KOiK06180
OMAiAHPSPGW
OrthoDBiPOG091H01TV

Family and domain databases

CDDicd02869 PseudoU_synth_RluCD_like, 1 hit
cd00165 S4, 1 hit
Gene3Di3.10.290.10, 1 hit
InterProiView protein in InterPro
IPR020103 PsdUridine_synth_cat_dom_sf
IPR006225 PsdUridine_synth_RluC/D
IPR006224 PsdUridine_synth_RluC/D_CS
IPR006145 PsdUridine_synth_RsuA/RluD
IPR002942 S4_RNA-bd
IPR036986 S4_RNA-bd_sf
PfamiView protein in Pfam
PF00849 PseudoU_synth_2, 1 hit
PF01479 S4, 1 hit
SMARTiView protein in SMART
SM00363 S4, 1 hit
SUPFAMiSSF55120 SSF55120, 1 hit
TIGRFAMsiTIGR00005 rluA_subfam, 1 hit
PROSITEiView protein in PROSITE
PS01129 PSI_RLU, 1 hit
PS50889 S4, 1 hit

Sequencei

Sequence statusi: Complete.

B1KDY0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTLEINLKSE ITATQTGQRL DQTLAELYPD YSRTRIKEWI QAGWVYIDGV
60 70 80 90 100
VSTKPREKVL EGQEIAIEAT LKEETAAKAQ AIDLDIVYED DHIIVINKQA
110 120 130 140 150
GLVVHPGAGN QDGTLMNALL HHCPGIELVP RAGIVHRLDK DTTGLMVVAK
160 170 180 190 200
TVEAQTHLVS ALQAREITRE YEAVVLGTLI SGGTVDEPID RHPTKRTHMA
210 220 230 240 250
VVHNGKPAMT HYRVAEKFRA HTRLRLRLES GRTHQIRVHM SHIGHTLVGD
260 270 280 290 300
PVYGGRPRPP KGVTPEFFET YMGFKRQALH AIRLELAHPY TFEIMSWQAP
310 320
VPEDMVTLTR ALRKDTEENP VAV
Length:323
Mass (Da):36,190
Last modified:April 29, 2008 - v1
Checksum:iF37807605F01F054
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000961 Genomic DNA Translation: ACA87982.1
RefSeqiWP_012326314.1, NC_010506.1

Genome annotation databases

EnsemblBacteriaiACA87982; ACA87982; Swoo_3722
KEGGiswd:Swoo_3722

Similar proteinsi

Entry informationi

Entry nameiB1KDY0_SHEWM
AccessioniPrimary (citable) accession number: B1KDY0
Entry historyiIntegrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: April 25, 2018
This is version 65 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health