B1KDY0 (B1KDY0_SHEWM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

Swoo_3722

Organism

Shewanella woodyi (strain ATCC 51908 / MS32) [Complete proteome] [HAMAP] EMBL ACA87982.1

Taxonomic identifier

392500 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella › Shewanella woodyi

Protein attributes

Sequence length	323 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Glycosidase EMBL ACA87982.1 Hydrolase Isomerase RuleBase RU003886
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro hydrolase activity, acting on glycosyl bonds Inferred from electronic annotation. Source: UniProtKB-KW pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1KDY0 [UniParc]. Last modified April 29, 2008. Version 1. Checksum: F37807605F01F054	FASTA	323	36,190
	10 20 30 40 50 60 MTLEINLKSE ITATQTGQRL DQTLAELYPD YSRTRIKEWI QAGWVYIDGV VSTKPREKVL 70 80 90 100 110 120 EGQEIAIEAT LKEETAAKAQ AIDLDIVYED DHIIVINKQA GLVVHPGAGN QDGTLMNALL 130 140 150 160 170 180 HHCPGIELVP RAGIVHRLDK DTTGLMVVAK TVEAQTHLVS ALQAREITRE YEAVVLGTLI 190 200 210 220 230 240 SGGTVDEPID RHPTKRTHMA VVHNGKPAMT HYRVAEKFRA HTRLRLRLES GRTHQIRVHM 250 260 270 280 290 300 SHIGHTLVGD PVYGGRPRPP KGVTPEFFET YMGFKRQALH AIRLELAHPY TFEIMSWQAP 310 320 VPEDMVTLTR ALRKDTEENP VAV

References

[1]

"Complete sequence of Shewanella woodyi ATCC 51908." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Lykidis A., Zhao J.-S., Richardson P. Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51908 / MS32.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000961 Genomic DNA. Translation: ACA87982.1.
RefSeq	YP_001762077.1. NC_010506.1.
3D structure databases
ProteinModelPortal	B1KDY0.
SMR	B1KDY0. Positions 5-319.
ModBase	Search...
Protein-protein interaction databases
STRING	392500.Swoo_3722.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACA87982; ACA87982; Swoo_3722.
GeneID	6118070.
KEGG	swd:Swoo_3722.
PATRIC	23610097. VBISheWoo126588_3835.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0564.
HOGENOM	HOG000275919.
KO	K06180.
OMA	KTIPAQT.
ProtClustDB	CLSK953509.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006225. PsdUridine_synth_RluC/D. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00005. rluA_subfam. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1KDY0_SHEWM

Accession

Primary (citable) accession number: B1KDY0

Entry history

Integrated into UniProtKB/TrEMBL:	April 29, 2008
Last sequence update:	April 29, 2008
Last modified:	May 1, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)