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B1KDY0 (B1KDY0_SHEWM) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Pseudouridine synthase RuleBase RU003886

EC=5.4.99.- RuleBase RU003886
Gene names
Ordered Locus Names:Swoo_3722 EMBL ACA87982.1
OrganismShewanella woodyi (strain ATCC 51908 / MS32) [Complete proteome] [HAMAP] EMBL ACA87982.1
Taxonomic identifier392500 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length323 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Sequences

Sequence LengthMass (Da)Tools
B1KDY0 [UniParc].

Last modified April 29, 2008. Version 1.
Checksum: F37807605F01F054

FASTA32336,190
        10         20         30         40         50         60 
MTLEINLKSE ITATQTGQRL DQTLAELYPD YSRTRIKEWI QAGWVYIDGV VSTKPREKVL 

        70         80         90        100        110        120 
EGQEIAIEAT LKEETAAKAQ AIDLDIVYED DHIIVINKQA GLVVHPGAGN QDGTLMNALL 

       130        140        150        160        170        180 
HHCPGIELVP RAGIVHRLDK DTTGLMVVAK TVEAQTHLVS ALQAREITRE YEAVVLGTLI 

       190        200        210        220        230        240 
SGGTVDEPID RHPTKRTHMA VVHNGKPAMT HYRVAEKFRA HTRLRLRLES GRTHQIRVHM 

       250        260        270        280        290        300 
SHIGHTLVGD PVYGGRPRPP KGVTPEFFET YMGFKRQALH AIRLELAHPY TFEIMSWQAP 

       310        320 
VPEDMVTLTR ALRKDTEENP VAV 

« Hide

References

[1]"Complete sequence of Shewanella woodyi ATCC 51908."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Lykidis A., Zhao J.-S., Richardson P.
Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 51908 / MS32.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000961 Genomic DNA. Translation: ACA87982.1.
RefSeqYP_001762077.1. NC_010506.1.

3D structure databases

ProteinModelPortalB1KDY0.
SMRB1KDY0. Positions 5-319.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING392500.Swoo_3722.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACA87982; ACA87982; Swoo_3722.
GeneID6118070.
KEGGswd:Swoo_3722.
PATRIC23610097. VBISheWoo126588_3835.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0564.
HOGENOMHOG000275919.
KOK06180.
OMAKSVYRHY.
OrthoDBEOG6P070X.

Enzyme and pathway databases

BioCycSWOO392500:GI2C-3853-MONOMER.

Family and domain databases

Gene3D3.10.290.10. 1 hit.
InterProIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTSM00363. S4. 1 hit.
[Graphical view]
SUPFAMSSF55120. SSF55120. 1 hit.
TIGRFAMsTIGR00005. rluA_subfam. 1 hit.
PROSITEPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB1KDY0_SHEWM
AccessionPrimary (citable) accession number: B1KDY0
Entry history
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: May 14, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)