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B1KDY0

- B1KDY0_SHEWM

UniProt

B1KDY0 - B1KDY0_SHEWM

Protein

Pseudouridine synthase

Gene

Swoo_3722

Organism
Shewanella woodyi (strain ATCC 51908 / MS32)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 42 (01 Oct 2014)
      Sequence version 1 (29 Apr 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. hydrolase activity, acting on glycosyl bonds Source: UniProtKB-KW
    2. pseudouridine synthase activity Source: InterPro
    3. RNA binding Source: InterPro

    GO - Biological processi

    1. pseudouridine synthesis Source: InterPro

    Keywords - Molecular functioni

    GlycosidaseImported, Hydrolase, IsomeraseUniRule annotation

    Enzyme and pathway databases

    BioCyciSWOO392500:GI2C-3853-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
    Gene namesi
    Ordered Locus Names:Swoo_3722Imported
    OrganismiShewanella woodyi (strain ATCC 51908 / MS32)Imported
    Taxonomic identifieri392500 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    ProteomesiUP000002168: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi392500.Swoo_3722.

    Structurei

    3D structure databases

    ProteinModelPortaliB1KDY0.
    SMRiB1KDY0. Positions 5-319.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the pseudouridine synthase rluA family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0564.
    HOGENOMiHOG000275919.
    KOiK06180.
    OMAiKSVYRHY.
    OrthoDBiEOG6P070X.

    Family and domain databases

    Gene3Di3.10.290.10. 1 hit.
    InterProiIPR020103. PsdUridine_synth_cat_dom.
    IPR006225. PsdUridine_synth_RluC/D.
    IPR006224. PsdUridine_synth_RluC/D_CS.
    IPR006145. PsdUridine_synth_RsuA/RluD.
    IPR002942. S4_RNA-bd.
    [Graphical view]
    PfamiPF00849. PseudoU_synth_2. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view]
    SMARTiSM00363. S4. 1 hit.
    [Graphical view]
    SUPFAMiSSF55120. SSF55120. 1 hit.
    TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
    PROSITEiPS01129. PSI_RLU. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B1KDY0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTLEINLKSE ITATQTGQRL DQTLAELYPD YSRTRIKEWI QAGWVYIDGV    50
    VSTKPREKVL EGQEIAIEAT LKEETAAKAQ AIDLDIVYED DHIIVINKQA 100
    GLVVHPGAGN QDGTLMNALL HHCPGIELVP RAGIVHRLDK DTTGLMVVAK 150
    TVEAQTHLVS ALQAREITRE YEAVVLGTLI SGGTVDEPID RHPTKRTHMA 200
    VVHNGKPAMT HYRVAEKFRA HTRLRLRLES GRTHQIRVHM SHIGHTLVGD 250
    PVYGGRPRPP KGVTPEFFET YMGFKRQALH AIRLELAHPY TFEIMSWQAP 300
    VPEDMVTLTR ALRKDTEENP VAV 323
    Length:323
    Mass (Da):36,190
    Last modified:April 29, 2008 - v1
    Checksum:iF37807605F01F054
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000961 Genomic DNA. Translation: ACA87982.1.
    RefSeqiWP_012326314.1. NC_010506.1.
    YP_001762077.1. NC_010506.1.

    Genome annotation databases

    EnsemblBacteriaiACA87982; ACA87982; Swoo_3722.
    GeneIDi6118070.
    KEGGiswd:Swoo_3722.
    PATRICi23610097. VBISheWoo126588_3835.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000961 Genomic DNA. Translation: ACA87982.1 .
    RefSeqi WP_012326314.1. NC_010506.1.
    YP_001762077.1. NC_010506.1.

    3D structure databases

    ProteinModelPortali B1KDY0.
    SMRi B1KDY0. Positions 5-319.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 392500.Swoo_3722.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACA87982 ; ACA87982 ; Swoo_3722 .
    GeneIDi 6118070.
    KEGGi swd:Swoo_3722.
    PATRICi 23610097. VBISheWoo126588_3835.

    Phylogenomic databases

    eggNOGi COG0564.
    HOGENOMi HOG000275919.
    KOi K06180.
    OMAi KSVYRHY.
    OrthoDBi EOG6P070X.

    Enzyme and pathway databases

    BioCyci SWOO392500:GI2C-3853-MONOMER.

    Family and domain databases

    Gene3Di 3.10.290.10. 1 hit.
    InterProi IPR020103. PsdUridine_synth_cat_dom.
    IPR006225. PsdUridine_synth_RluC/D.
    IPR006224. PsdUridine_synth_RluC/D_CS.
    IPR006145. PsdUridine_synth_RsuA/RluD.
    IPR002942. S4_RNA-bd.
    [Graphical view ]
    Pfami PF00849. PseudoU_synth_2. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view ]
    SMARTi SM00363. S4. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55120. SSF55120. 1 hit.
    TIGRFAMsi TIGR00005. rluA_subfam. 1 hit.
    PROSITEi PS01129. PSI_RLU. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 51908 / MS32Imported.

    Entry informationi

    Entry nameiB1KDY0_SHEWM
    AccessioniPrimary (citable) accession number: B1KDY0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 29, 2008
    Last sequence update: April 29, 2008
    Last modified: October 1, 2014
    This is version 42 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3