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B1KDY0

- B1KDY0_SHEWM

UniProt

B1KDY0 - B1KDY0_SHEWM

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Protein

Pseudouridine synthase

Gene
Swoo_3722
Organism
Shewanella woodyi (strain ATCC 51908 / MS32)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. hydrolase activity, acting on glycosyl bonds Source: UniProtKB-KW
  2. pseudouridine synthase activity Source: InterPro
  3. RNA binding Source: InterPro

GO - Biological processi

  1. pseudouridine synthesis Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase, IsomeraseUniRule annotation

Enzyme and pathway databases

BioCyciSWOO392500:GI2C-3853-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
Gene namesi
Ordered Locus Names:Swoo_3722Imported
OrganismiShewanella woodyi (strain ATCC 51908 / MS32)Imported
Taxonomic identifieri392500 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000002168: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi392500.Swoo_3722.

Structurei

3D structure databases

ProteinModelPortaliB1KDY0.
SMRiB1KDY0. Positions 5-319.

Family & Domainsi

Sequence similaritiesi

Belongs to the pseudouridine synthase rluA family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0564.
HOGENOMiHOG000275919.
KOiK06180.
OMAiKSVYRHY.
OrthoDBiEOG6P070X.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1KDY0-1 [UniParc]FASTAAdd to Basket

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MTLEINLKSE ITATQTGQRL DQTLAELYPD YSRTRIKEWI QAGWVYIDGV    50
VSTKPREKVL EGQEIAIEAT LKEETAAKAQ AIDLDIVYED DHIIVINKQA 100
GLVVHPGAGN QDGTLMNALL HHCPGIELVP RAGIVHRLDK DTTGLMVVAK 150
TVEAQTHLVS ALQAREITRE YEAVVLGTLI SGGTVDEPID RHPTKRTHMA 200
VVHNGKPAMT HYRVAEKFRA HTRLRLRLES GRTHQIRVHM SHIGHTLVGD 250
PVYGGRPRPP KGVTPEFFET YMGFKRQALH AIRLELAHPY TFEIMSWQAP 300
VPEDMVTLTR ALRKDTEENP VAV 323
Length:323
Mass (Da):36,190
Last modified:April 29, 2008 - v1
Checksum:iF37807605F01F054
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000961 Genomic DNA. Translation: ACA87982.1.
RefSeqiWP_012326314.1. NC_010506.1.
YP_001762077.1. NC_010506.1.

Genome annotation databases

EnsemblBacteriaiACA87982; ACA87982; Swoo_3722.
GeneIDi6118070.
KEGGiswd:Swoo_3722.
PATRICi23610097. VBISheWoo126588_3835.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000961 Genomic DNA. Translation: ACA87982.1 .
RefSeqi WP_012326314.1. NC_010506.1.
YP_001762077.1. NC_010506.1.

3D structure databases

ProteinModelPortali B1KDY0.
SMRi B1KDY0. Positions 5-319.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 392500.Swoo_3722.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACA87982 ; ACA87982 ; Swoo_3722 .
GeneIDi 6118070.
KEGGi swd:Swoo_3722.
PATRICi 23610097. VBISheWoo126588_3835.

Phylogenomic databases

eggNOGi COG0564.
HOGENOMi HOG000275919.
KOi K06180.
OMAi KSVYRHY.
OrthoDBi EOG6P070X.

Enzyme and pathway databases

BioCyci SWOO392500:GI2C-3853-MONOMER.

Family and domain databases

Gene3Di 3.10.290.10. 1 hit.
InterProi IPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view ]
Pfami PF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view ]
SMARTi SM00363. S4. 1 hit.
[Graphical view ]
SUPFAMi SSF55120. SSF55120. 1 hit.
TIGRFAMsi TIGR00005. rluA_subfam. 1 hit.
PROSITEi PS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51908 / MS32.

Entry informationi

Entry nameiB1KDY0_SHEWM
AccessioniPrimary (citable) accession number: B1KDY0
Entry historyi
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: September 3, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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