B1KDK7 (B1KDK7_SHEWM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Cystathionine beta-lyase EMBL ACA86404.1

Gene names

Ordered Locus Names:

Swoo_2120

Organism

Shewanella woodyi (strain ATCC 51908 / MS32) [Complete proteome] [HAMAP] EMBL ACA86404.1

Taxonomic identifier

392500 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	391 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Lyase EMBL ACA86404.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cellular amino acid metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	cystathionine beta-lyase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1KDK7 [UniParc]. Last modified April 29, 2008. Version 1. Checksum: D5063891DA1E29A6	FASTA	391	43,199
	10 20 30 40 50 60 MKKDTQIVSV GRDKKWTKGV INPPVFRAST MVFDTMEEMR FATKNRAKGE MFYGRRGGPT 70 80 90 100 110 120 HFAFQAAIAE LEGGVGTALY PSGSAAISGA LLSFLKAGDH LLMVDSAYEP TRDLCNKLLA 130 140 150 160 170 180 GFGIETTYYD PMIGAGIEAL IKPNTKVLFL ESPGSITMEI QDVPTLAKVA HQHGLTVMLD 190 200 210 220 230 240 NTWASPINSR PFEMGVDISI QAATKYIVGH SDVMMGTATS NEAHWDQLRE NSYLMGQCTS 250 260 270 280 290 300 PDDVYLASRG LRTLGVRMQQ HERNALKVAN WLQSRPEVDH IRHPAFDTCP GHEFFERDFS 310 320 330 340 350 360 GSNGLFSFVL KEGSLNSVTA LVENMAHFKM GFSWGGFESL ILGVFGIDRL RTATHWDSSK 370 380 390 PLIRLHVGLE DPDDLIADLE AGFERFNQAL K

References

[1]

"Complete sequence of Shewanella woodyi ATCC 51908." Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Lykidis A., Zhao J.-S., Richardson P. Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51908 / MS32.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000961 Genomic DNA. Translation: ACA86404.1.
RefSeq	YP_001760499.1. NC_010506.1.
3D structure databases
ProteinModelPortal	B1KDK7.
SMR	B1KDK7. Positions 2-386.
ModBase	Search...
Protein-protein interaction databases
STRING	B1KDK7.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6116383.
GenomeReviews	Gene locus Swoo_2120 in contig CP000961_GR.
KEGG	swd:Swoo_2120.
PATRIC	23606647. VBISheWoo126588_2191.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG754729.
OMA	REQSYLM.
ProtClustDB	PRK09028.
Family and domain databases
InterPro	IPR000277. Cys/Met-Metab_PyrdxlP-dep_enz. IPR006233. Cys_b_lyase_bac. IPR015424. PyrdxlP-dep_Trfase_major_dom. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Gene3D	G3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit. G3DSA:3.90.1150.10. PyrdxlP-dep_Trfase_major_sub2. 1 hit.
KO	K01760.
PANTHER	PTHR11808:SF8. Cys_b_lyase_bac. 1 hit. PTHR11808. Cys_Met_Meta_PP. 1 hit.
Pfam	PF01053. Cys_Met_Meta_PP. 1 hit. [Graphical view]
PIRSF	PIRSF001434. CGS. 1 hit.
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01324. Cysta_beta_ly_B. 1 hit.
PROSITE	PS00868. CYS_MET_METAB_PP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1KDK7_SHEWM

Accession

Primary (citable) accession number: B1KDK7

Entry history

Integrated into UniProtKB/TrEMBL:	April 29, 2008
Last sequence update:	April 29, 2008
Last modified:	January 25, 2012
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)