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Protein
Submitted name:

Type III secretion outer membrane pore, YscC/HrcC family

Gene

Bcenmc03_5918

Organism
Burkholderia cenocepacia (strain MC0-3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Type III secretion outer membrane pore, YscC/HrcC familyImported
Gene namesi
Ordered Locus Names:Bcenmc03_5918Imported
OrganismiBurkholderia cenocepacia (strain MC0-3)Imported
Taxonomic identifieri406425 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
Proteomesi
  • UP000002169 Componenti: Chromosome 2

Subcellular locationi

  • Cell outer membrane UniRule annotation

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Sequence analysisAdd BLAST23
ChainiPRO_500276702524 – 588Sequence analysisAdd BLAST565

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini176 – 340Secretin_NInterPro annotationAdd BLAST165

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

HOGENOMiHOG000214462.
KOiK03219.
OMAiYLMARIS.
OrthoDBiPOG091H00DF.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.

Sequencei

Sequence statusi: Complete.

B1K4U4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTFRFGLLF ILVAACVAAT VHAAPVNWHT RMVDYTADSK DIKDVLRDFA
60 70 80 90 100
ASQGIPADIS KDVQGSVTGK FHMPPQRLLD TLASSFGFVW YYDGQVLDIV
110 120 130 140 150
TPDEMKSTLI KLDHGSTAQL RSTLAAMNVT DPRFRITYDD VQGAAIVNGP
160 170 180 190 200
PNYVKLVGDV AQRLDTTTRH RAGTVVQVYP LHHAWAMDRS VVADGQSMTL
210 220 230 240 250
LGVATVLNNV YHPQQGGGGN SGGGGRAPNV QRAQPMGNVG GARMQAGGPS
260 270 280 290 300
APLPPGTTLA NGESSLGLLS GLSGRPSQQL SSAVASSGPT AGGQASGGGD
310 320 330 340 350
EEALPVIEAD QRTNSVLIRD TPDRMYQYPA LIQRLDVKPR LIEIEAHIFE
360 370 380 390 400
VDTSSIRQLG VNWTAHNSHI DLQTGNGLGA QNTYGGTLTQ NFGNTTLAGN
410 420 430 440 450
VTAAAMPVGG VLSAVIGNAG RYLMANVSAL EEQNLAKIDA SPKVTTLDNI
460 470 480 490 500
EADMANQTQF FVRVSGYTSA DLYSVSTGVS LRVLPMVVDE GGRTQIKLDV
510 520 530 540 550
AIQDGQLTSR TVDNIPVISS TNINTSAFVN EGEALLIAGY KNDGRIDTTT
560 570 580
GVPVLSKIPV IGNLFKYTDR ENTRMERLFL LTPRIIEL
Length:588
Mass (Da):62,526
Last modified:April 29, 2008 - v1
Checksum:iC266611F9A56C8A8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000959 Genomic DNA. Translation: ACA95039.1.
RefSeqiWP_012339985.1. NC_010515.1.

Genome annotation databases

EnsemblBacteriaiACA95039; ACA95039; Bcenmc03_5918.
KEGGibcm:Bcenmc03_5918.
PATRICi19101557. VBIBurCen61509_7235.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000959 Genomic DNA. Translation: ACA95039.1.
RefSeqiWP_012339985.1. NC_010515.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACA95039; ACA95039; Bcenmc03_5918.
KEGGibcm:Bcenmc03_5918.
PATRICi19101557. VBIBurCen61509_7235.

Phylogenomic databases

HOGENOMiHOG000214462.
KOiK03219.
OMAiYLMARIS.
OrthoDBiPOG091H00DF.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiB1K4U4_BURCC
AccessioniPrimary (citable) accession number: B1K4U4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: November 2, 2016
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.