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Protein

50S ribosomal protein L34

Gene

rpmH

Organism
Burkholderia cenocepacia (strain MC0-3)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciBCEN406425:GHD9-3260-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L34UniRule annotation
Gene namesi
Name:rpmHUniRule annotation
Ordered Locus Names:Bcenmc03_3184
OrganismiBurkholderia cenocepacia (strain MC0-3)
Taxonomic identifieri406425 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
Proteomesi
  • UP000002169 Componenti: Chromosome 1

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 444450S ribosomal protein L34PRO_1000196013Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliB1K0Y7.
SMRiB1K0Y7. Positions 1-44.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L34P family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000111572.
KOiK02914.
OrthoDBiEOG6DZF71.

Family and domain databases

HAMAPiMF_00391. Ribosomal_L34.
InterProiIPR000271. Ribosomal_L34.
IPR020939. Ribosomal_L34_CS.
[Graphical view]
PANTHERiPTHR14503. PTHR14503. 1 hit.
PfamiPF00468. Ribosomal_L34. 1 hit.
[Graphical view]
ProDomiPD003101. Ribosomal_L34. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01030. rpmH_bact. 1 hit.
PROSITEiPS00784. RIBOSOMAL_L34. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1K0Y7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40 
MKRTYQPSVT RRKRTHGFRV RMKTAGGRKV INARRAKGRK RLAI
Length:44
Mass (Da):5,195
Last modified:April 29, 2008 - v1
Checksum:i57BA3604DAEF4E65
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000958 Genomic DNA. Translation: ACA92341.1.
RefSeqiWP_004198824.1. NC_010508.1.

Genome annotation databases

EnsemblBacteriaiACA92341; ACA92341; Bcenmc03_3184.
GeneIDi6933504.
KEGGibcm:Bcenmc03_3184.
PATRICi19093674. VBIBurCen61509_3314.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000958 Genomic DNA. Translation: ACA92341.1.
RefSeqiWP_004198824.1. NC_010508.1.

3D structure databases

ProteinModelPortaliB1K0Y7.
SMRiB1K0Y7. Positions 1-44.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACA92341; ACA92341; Bcenmc03_3184.
GeneIDi6933504.
KEGGibcm:Bcenmc03_3184.
PATRICi19093674. VBIBurCen61509_3314.

Phylogenomic databases

HOGENOMiHOG000111572.
KOiK02914.
OrthoDBiEOG6DZF71.

Enzyme and pathway databases

BioCyciBCEN406425:GHD9-3260-MONOMER.

Family and domain databases

HAMAPiMF_00391. Ribosomal_L34.
InterProiIPR000271. Ribosomal_L34.
IPR020939. Ribosomal_L34_CS.
[Graphical view]
PANTHERiPTHR14503. PTHR14503. 1 hit.
PfamiPF00468. Ribosomal_L34. 1 hit.
[Graphical view]
ProDomiPD003101. Ribosomal_L34. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01030. rpmH_bact. 1 hit.
PROSITEiPS00784. RIBOSOMAL_L34. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 1 of Burkholderia cenocepacia MC0-3."
    Copeland A., Lucas S., Lapidus A., Barry K., Bruce D., Goodwin L., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L.
    , Kyrpides N., Mikhailova N., Tiedje J., Richardson P.
    Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MC0-3.

Entry informationi

Entry nameiRL34_BURCC
AccessioniPrimary (citable) accession number: B1K0Y7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: April 29, 2008
Last modified: April 13, 2016
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.