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Protein

Outer membrane protein assembly factor BamA

Gene

bamA

Organism
Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamD, the core component of the assembly machinery.UniRule annotation

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciYPSE502800:GH0W-1087-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Outer membrane protein assembly factor BamAUniRule annotation
Gene namesi
Name:bamAUniRule annotation
Synonyms:yaeT
Ordered Locus Names:YPK_1074
OrganismiYersinia pseudotuberculosis serotype O:3 (strain YPIII)
Taxonomic identifieri502800 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
Proteomesi
  • UP000000721 Componenti: Chromosome

Subcellular locationi

  • Cell outer membrane UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020UniRule annotationAdd
BLAST
Chaini21 – 795775Outer membrane protein assembly factor BamAPRO_5000316123Add
BLAST

Interactioni

Subunit structurei

Part of the Bam complex, which is composed of the outer membrane protein BamA, and four lipoproteins BamB, BamC, BamD and BamE.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliB1JQG8.
SMRiB1JQG8. Positions 21-350.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini24 – 9168POTRA 1PROSITE-ProRule annotationAdd
BLAST
Domaini92 – 17281POTRA 2PROSITE-ProRule annotationAdd
BLAST
Domaini175 – 26389POTRA 3PROSITE-ProRule annotationAdd
BLAST
Domaini266 – 34479POTRA 4PROSITE-ProRule annotationAdd
BLAST
Domaini347 – 42175POTRA 5PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the BamA family.UniRule annotation
Contains 5 POTRA domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Signal, Transmembrane, Transmembrane beta strand

Phylogenomic databases

HOGENOMiHOG000261766.
KOiK07277.
OMAiNLDRGYF.
OrthoDBiEOG6F81K6.

Family and domain databases

HAMAPiMF_01430. OM_assembly_BamA.
InterProiIPR000184. Bac_surfAg_D15.
IPR023707. OM_assembly_BamA.
IPR010827. Surface_Ag_variable_number.
[Graphical view]
PfamiPF01103. Bac_surface_Ag. 1 hit.
PF07244. POTRA. 4 hits.
[Graphical view]
PIRSFiPIRSF006076. OM_assembly_OMP85. 1 hit.
TIGRFAMsiTIGR03303. OM_YaeT. 1 hit.
PROSITEiPS51779. POTRA. 5 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

B1JQG8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAMKKLLIAS LLFGSATVYG ADGFVVNDIH FEGLQRVAVG AALLNMPVRV
60 70 80 90 100
GDTVSDDDIG KTIRALFATG NFEDVRVLRD GNTLIVQVKE RPTIASITFS
110 120 130 140 150
GNKAVKEDML KQNLEASGVR VGEALDRTTI SNIEKGLEDF YYSVGKYSAS
160 170 180 190 200
VKAVVTPLPR NRVDLKLVFT EGVSAKIQQI NIVGNHSFTT DELISRFQLR
210 220 230 240 250
DEVPWWNVVG DRKYQKQKLA GDLETLRSFY LDRGYARFNI DSTQVSLTPD
260 270 280 290 300
KKGIYVTINI TEGPQFKLNS VIVSGNLAGH QSEAEKLTKI EPGELFNGSK
310 320 330 340 350
VTRMEDDIKK MLGRYGYAYP RVVTQPEIND DDKTVKLHIN VDAGNRFYVR
360 370 380 390 400
HIRFEGNDTS KDSVLRREMR QMEGAWLGND QVEAGKERLN RLGYFETVDV
410 420 430 440 450
ETQRVPGAAD LVDVTYKVKE RNTGSLNFGI GYGTESGVSF QVGVQQDNWL
460 470 480 490 500
GTGNTVGING TKNDYQTYAE FTLMDPYFTV DGVSLGGRIF YNDFKADNAD
510 520 530 540 550
LSGYTNSSYG ADGTLGFPIN ENNSLRVGVG YVHNDLSDML PQVAMWRYLE
560 570 580 590 600
SVGERPGYDG REGFTTDDFT LNLGWTYNNL DRGFFPTSGV KSSVNTKITV
610 620 630 640 650
PGSDNEFYKV TFDTSAYQPL NEDRSWVLLG RGRLGYGDGI GSKEMPFYEN
660 670 680 690 700
FYAGGSSTVR GFRSNNIGPK AAYYANGGAT VTNSTDAVGG NAMAVASIEL
710 720 730 740 750
ITPTPFISEK YSNSVRTSIF IDSGTVWDTN WENTAKTRAA GIPDYGKASN
760 770 780 790
IRVSAGVALQ WMSPLGPLVF SYAKPVKDYE GDKSEQFQFN IGKTW
Length:795
Mass (Da):87,838
Last modified:April 29, 2008 - v1
Checksum:i8C4581328D38F821
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000950 Genomic DNA. Translation: ACA67375.1.
RefSeqiWP_002212139.1. NZ_CP009792.1.

Genome annotation databases

EnsemblBacteriaiACA67375; ACA67375; YPK_1074.
KEGGiypy:YPK_1074.
PATRICi18659300. VBIYerPse127545_1151.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000950 Genomic DNA. Translation: ACA67375.1.
RefSeqiWP_002212139.1. NZ_CP009792.1.

3D structure databases

ProteinModelPortaliB1JQG8.
SMRiB1JQG8. Positions 21-350.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACA67375; ACA67375; YPK_1074.
KEGGiypy:YPK_1074.
PATRICi18659300. VBIYerPse127545_1151.

Phylogenomic databases

HOGENOMiHOG000261766.
KOiK07277.
OMAiNLDRGYF.
OrthoDBiEOG6F81K6.

Enzyme and pathway databases

BioCyciYPSE502800:GH0W-1087-MONOMER.

Family and domain databases

HAMAPiMF_01430. OM_assembly_BamA.
InterProiIPR000184. Bac_surfAg_D15.
IPR023707. OM_assembly_BamA.
IPR010827. Surface_Ag_variable_number.
[Graphical view]
PfamiPF01103. Bac_surface_Ag. 1 hit.
PF07244. POTRA. 4 hits.
[Graphical view]
PIRSFiPIRSF006076. OM_assembly_OMP85. 1 hit.
TIGRFAMsiTIGR03303. OM_YaeT. 1 hit.
PROSITEiPS51779. POTRA. 5 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: YPIII.

Entry informationi

Entry nameiBAMA_YERPY
AccessioniPrimary (citable) accession number: B1JQG8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: April 29, 2008
Last modified: December 9, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.