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B1JPM5 (B1JPM5_YERPY) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Beta-galactosidase PIRNR PIRNR001084
Short name=Beta-gal PIRNR PIRNR001084
EC=3.2.1.23 PIRNR PIRNR001084
Gene names
Ordered Locus Names:YPK_0973
OrganismYersinia pseudotuberculosis serotype O:3 (strain YPIII) [Complete proteome] [HAMAP] EMBL ACA67274.1
Taxonomic identifier502800 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Yersinia

Protein attributes

Sequence length686 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. PIRNR PIRNR001084

Sequence similarities

Belongs to the glycosyl hydrolase 42 family. PIRNR PIRNR001084

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1571Proton donor By similarity PIRSR PIRSR001084-1
Active site3141Nucleophile By similarity PIRSR PIRSR001084-1
Metal binding1221Zinc By similarity PIRSR PIRSR001084-3
Metal binding1621Zinc By similarity PIRSR PIRSR001084-3
Metal binding1641Zinc By similarity PIRSR PIRSR001084-3
Metal binding1671Zinc By similarity PIRSR PIRSR001084-3
Binding site1181Substrate By similarity PIRSR PIRSR001084-2
Binding site1561Substrate By similarity PIRSR PIRSR001084-2
Binding site3221Substrate By similarity PIRSR PIRSR001084-2

Sequences

Sequence LengthMass (Da)Tools
B1JPM5 [UniParc].

Last modified April 29, 2008. Version 1.
Checksum: CBDA4617C9775AB4

FASTA68678,165
        10         20         30         40         50         60 
MSKFPPLSAK VSALLHGADY NPEQWENYPD IIDKDIAMMK QAKCNVMSVG IFSWVKLEPS 

        70         80         90        100        110        120 
EGEYNFSWLD ELIEKLYAAG IHIFLATPSG ARPAWMSQKY PEVLRVGRDR VPALHGGRHN 

       130        140        150        160        170        180 
HCMTSPVYRQ KVRQINQKLA ERYAHHPAVI GWHISNEYGG ECHCHSCQQK FRLWLQDRYQ 

       190        200        210        220        230        240 
TLDNLNEAWW SAFWSHTYSD WSQIESPAPQ GEVSIHGLNL DWRRFNTAQV TEFCSEEAKP 

       250        260        270        280        290        300 
LKAANPELPV TTNFMEYFYD YDYWKLAQVI DFISWDSYPM WHREKDETQL ACYTAMYHDL 

       310        320        330        340        350        360 
MRTLKQGRPF VLMESTPSAT NWQPTSKLKK PGMHILSSLQ AVAHGADAVQ YFQWRKSRGS 

       370        380        390        400        410        420 
VEKFHGAVVD HVGHIDTRVG REVSELGRIL EAMSPVMGSK VDADVAIIFD WESRWAMDDA 

       430        440        450        460        470        480 
EGPRNCGLEY EKTVAEHYRP FWERGIAVDI INADCDLSGY KLVIAPMLYM VREGFAERAT 

       490        500        510        520        530        540 
RFVEQGGQFV ATYWSGIVNE SDLCHLGGFP GPLRPLLGIW SEEIDCLADG ESNQVQGLAG 

       550        560        570        580        590        600 
NKAGLQGPYQ AIHLCDLIHL EGATAVARYR DDFYADRAAV TVNFVGEGKA WYVASRNDAA 

       610        620        630        640        650        660 
FQRDFFMNIA EELNLARALD TQFPYGVTAH RRTDGESEFI VVENYSNDSK SLVLPAVYRD 

       670        680 
MVDQQPVQGS LTLAPWGSRV LTRYLE

« Hide

References

[1]"Complete sequence of Yersinia pseudotuberculosis YPIII."
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Challacombe J.F., Green L., Lindler L.E., Nikolich M.P., Richardson P.
Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: YPIII.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000950 Genomic DNA. Translation: ACA67274.1.
RefSeqYP_001719727.1. NC_010465.1.

3D structure databases

ProteinModelPortalB1JPM5.
ModBaseSearch...

Protein-protein interaction databases

STRINGB1JPM5.

Protein family/group databases

CAZyGH42. Glycoside Hydrolase Family 42.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6090757.
GenomeReviewsGene locus YPK_0973 in contig CP000950_GR.
KEGGypy:YPK_0973.
PATRIC18659076. VBIYerPse127545_1042.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG476453.
OMAHGSDTVQ.
ProtClustDBCLSK888649.

Family and domain databases

InterProIPR013739. Beta_galactosidase_C.
IPR013738. Beta_galactosidase_Trimer.
IPR003476. Glyco_hydro_42.
IPR013529. Glyco_hydro_42_N.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KOK12308.
PfamPF02449. Glyco_hydro_42. 1 hit.
PF08533. Glyco_hydro_42C. 1 hit.
PF08532. Glyco_hydro_42M. 1 hit.
[Graphical view]
PIRSFPIRSF001084. B-galactosidase. 1 hit.
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB1JPM5_YERPY
AccessionPrimary (citable) accession number: B1JPM5
Entry history
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: December 14, 2011
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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