B1JBJ6 (B1JBJ6_PSEPW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA topoisomerase RuleBase RU000518
EC=5.99.1.2 RuleBase RU000518

Gene names

Ordered Locus Names:

PputW619_3423

Organism

Pseudomonas putida (strain W619) [Complete proteome] [HAMAP] EMBL ACA73907.1

Taxonomic identifier

390235 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas putida group › Pseudomonas putida

Protein attributes

Sequence length	654 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP-independent breakage of single-stranded DNA, followed by passage and rejoining. RuleBase RU000518 SAAS SAAS013825
Sequence similarities	Belongs to the type IA topoisomerase family. RuleBase RU004206 Contains 1 Toprim domain. SAAS SAAS013825

Ontologies

Keywords
Ligand	ATP-binding SAAS SAAS013825 DNA-binding RuleBase RU000518 SAAS SAAS013825 Nucleotide-binding
Molecular function	Isomerase Topoisomerase RuleBase RU000518 SAAS SAAS013825
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular_component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase type I activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B1JBJ6 [UniParc]. Last modified April 29, 2008. Version 1. Checksum: A0E89739AE7FEE38	FASTA	654	72,147
	10 20 30 40 50 60 MRLFLCEKPS QAKDIAKILG ANRKGDGCWQ GTDVCVTWCI GHLLETAPPD SYDERYKRWN 70 80 90 100 110 120 LADLPIIPEK WKMLVKPKTA SQFKAVKRLL GEARELVIAT DADREGEMIA RELVEHCRYR 130 140 150 160 170 180 GPIQRLWLSA LDDASIRKAL ARLLPGQDTF NLYHSALGRS RADWLIGMNM SRLFTLLGRQ 190 200 210 220 230 240 SGYQGVLPVG RVQTPTLRLV VDRDRSIADF VPVPFWAIEV QLEHAGLVFN AQWRAPEGIC 250 260 270 280 290 300 DDQGRCLNQA LAQQAATDIG NARSARVLKV TTERVREAAP LPFDLGTLQE LCSKKFGLGA 310 320 330 340 350 360 QETLDIAQAL YETHKLITYP RSDCGYLPVS QHSEAPAILT ALQRVDSSLA PLQAHLEPQR 370 380 390 400 410 420 RSRAWNDAKV TAHHGIIPTA AASDPSRLPA KHKAVYTLIR ARYLAQFLPN HEYDRTQAEF 430 440 450 460 470 480 DCAGHALRAV GKQIVEPGWR RALPEALAPA KGREAPPAQV LPTLCESQDC SVQGLQLKDL 490 500 510 520 530 540 WTQPPKPFTE GDLIKAMKNV AKLVDDPRLK QKLKETTGIG TEATRASIIQ GLLDRGYLVK 550 560 570 580 590 600 NGKALAATPA AFSLIDAVPR AIADPGTTAI WEQALDMVQS GEMSLEDFVA RQSAWMGKLV 610 620 630 640 650 ERCSGMRMTI NGPAVGKAAP WKKKRRNGGK GKLAASGAKT TASKPRQPRR KAPN

References

[1]

"Complete sequence of Pseudomonas putida W619." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Kim E., Taghavi S., Vangronsveld D., van der Lelie D., Richardson P. Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: W619.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000949 Genomic DNA. Translation: ACA73907.1.
RefSeq	YP_001750276.1. NC_010501.1.
3D structure databases
ProteinModelPortal	B1JBJ6.
ModBase	Search...
Protein-protein interaction databases
STRING	390235.PputW619_3423.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACA73907; ACA73907; PputW619_3423.
GeneID	6112376.
KEGG	ppw:PputW619_3423.
PATRIC	19956702. VBIPsePut93764_3444.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0550.
HOGENOM	HOG000086848.
KO	K03169.
OMA	HEYDRTQ.
ProtClustDB	PRK07726.
Enzyme and pathway databases
BioCyc	PPUT390235:GHHJ-3469-MONOMER.
Family and domain databases
Gene3D	1.10.460.10. 2 hits. 2.70.20.10. 2 hits.
InterPro	IPR000380. Topo_IA. IPR003601. Topo_IA_2. IPR023406. Topo_IA_AS. IPR013497. Topo_IA_cen. IPR013824. Topo_IA_cen_sub1. IPR013825. Topo_IA_cen_sub2. IPR023405. Topo_IA_core_domain. IPR003602. Topo_IA_DNA-bd. IPR005738. TopoIII_bac. IPR006171. Toprim_domain. [Graphical view]
PANTHER	PTHR11390. PTHR11390. 1 hit.
Pfam	PF01131. Topoisom_bac. 1 hit. PF01751. Toprim. 1 hit. [Graphical view]
PRINTS	PR00417. PRTPISMRASEI.
SMART	SM00437. TOP1Ac. 1 hit. SM00436. TOP1Bc. 1 hit. SM00493. TOPRIM. 1 hit. [Graphical view]
SUPFAM	SSF56712. Topo_IA_core. 1 hit.
TIGRFAMs	TIGR01056. topB. 1 hit.
PROSITE	PS00396. TOPOISOMERASE_I_PROK. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B1JBJ6_PSEPW

Accession

Primary (citable) accession number: B1JBJ6

Entry history

Integrated into UniProtKB/TrEMBL:	April 29, 2008
Last sequence update:	April 29, 2008
Last modified:	May 1, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)