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B1J2K8 (B1J2K8_PSEPW) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Choline dehydrogenase HAMAP MF_00750
Short name=CDH HAMAP MF_00750
Short name=CHD HAMAP MF_00750
EC=1.1.99.1 HAMAP MF_00750
Gene names
Name:betA HAMAP MF_00750
Ordered Locus Names:PputW619_0401
OrganismPseudomonas putida (strain W619) [Complete proteome] [HAMAP] EMBL ACA70907.1
Taxonomic identifier390235 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length563 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine By similarity. HAMAP MF_00750 SAAS SAAS007867

Catalytic activity

Choline + acceptor = betaine aldehyde + reduced acceptor. HAMAP MF_00750 SAAS SAAS007867

Cofactor

FAD By similarity. HAMAP MF_00750 SAAS SAAS007867

Pathway

Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. HAMAP MF_00750 SAAS SAAS007867

Sequence similarities

Belongs to the GMC oxidoreductase family. HAMAP MF_00750

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding4 – 3330FAD By similarity HAMAP MF_00750

Sites

Active site4731 By similarity HAMAP MF_00750

Sequences

Sequence LengthMass (Da)Tools
B1J2K8 [UniParc].

Last modified April 29, 2008. Version 1.
Checksum: 239962E70BA20A3C

FASTA56362,309
        10         20         30         40         50         60 
MEYDYIIVGA GSAGNTLATR LTEDASVTVL LLEAGGPDYR FDFRTQMPAA LAFPLQGRRY 

        70         80         90        100        110        120 
NWAYETDPEP HMDGRRMECG RGKGLGGSSL INGMCYIRGN ALDFDGWAKL PGLEDWAYLD 

       130        140        150        160        170        180 
CLPYFRKAET RDIGPNDYHG GEGPLSVATP KAGNNPLFNA MVEAGVQAGY PRTEDLNGYQ 

       190        200        210        220        230        240 
QEGFGPMDRS VTKNGRRSST ARGYLDQAKK RPNLTIVTHA LSDRVLFEGK RAVGVTYLVG 

       250        260        270        280        290        300 
DSEERVEARA RKEVIVSSGA IASPQLLQRS GVGPRALLES LDIPVVHDLP GVGENLQDHL 

       310        320        330        340        350        360 
ELYLQYACTQ PVSLYPSLLW WNQPAIGAEW LFNGTGIGAS NQFEAGGFIR TRPEFEWPNI 

       370        380        390        400        410        420 
QYHFLPVAIN YNGSNGVKEH GFQAHMGSMR SPSRGRIQVK SKDPRQHPSI LFNYMATEQD 

       430        440        450        460        470        480 
WQEFRDGIRL TREIMAQPAL DPYRGREISP GAHVQTDEEL DKFIREHAET AFHPSCSCKM 

       490        500        510        520        530        540 
GTDDMAVVDG EGRVHGMQGL RVVDASIMPI IITGNLNATT IMIAEKISDK IRNRKPLPRS 

       550        560 
TAKYYVANGA PVKGKPMREV KQA

« Hide

References

[1]"Complete sequence of Pseudomonas putida W619."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., Taghavi S., Vangronsveld D., van der Lelie D., Richardson P.
Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000949 Genomic DNA. Translation: ACA70907.1.
RefSeqYP_001747276.1. NC_010501.1.

3D structure databases

ProteinModelPortalB1J2K8.
ModBaseSearch...

Protein-protein interaction databases

STRINGB1J2K8.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6109309.
GenomeReviewsGene locus PputW619_0401 in contig CP000949_GR.
KEGGppw:PputW619_0401.
PATRIC19950529. VBIPsePut93764_0406.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG734713.
OMAEISPGAH.
ProtClustDBPRK02106.

Family and domain databases

HAMAPMF_00750. Choline_dehydrogen.
[Tree]
InterProIPR011533. Choline_dehydrogenase.
IPR012132. GMC_OxRdtase.
IPR000172. GMC_OxRdtase_N.
IPR007867. GMC_OxRtase_C.
[Graphical view]
KOK00108.
PfamPF05199. GMC_oxred_C. 1 hit.
PF00732. GMC_oxred_N. 1 hit.
[Graphical view]
PIRSFPIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMsTIGR01810. BetA. 1 hit.
PROSITEPS00623. GMC_OXRED_1. 1 hit.
PS00624. GMC_OXRED_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB1J2K8_PSEPW
AccessionPrimary (citable) accession number: B1J2K8
Entry history
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: December 14, 2011
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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