B1J1C1 (B1J1C1_PSEPW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Beta-agarase EMBL ACA71652.1
EC=3.2.1.81 EMBL ACA71652.1

Gene names

Ordered Locus Names:

PputW619_1147

Organism

Pseudomonas putida (strain W619) [Complete proteome] [HAMAP] EMBL ACA71652.1

Taxonomic identifier

390235 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length	755 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ACA71652.1
Molecular function	Glycosidase EMBL ACA71652.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	beta-galactosidase complex Inferred from electronic annotation. Source: InterPro
Molecular function	beta-agarase activity Inferred from electronic annotation. Source: EC beta-galactosidase activity Inferred from electronic annotation. Source: InterPro cation binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 21	21	Potential EMBL ACA71652.1
	Chain	22 – 755	734	Potential EMBL ACA71652.1		PRO_5000314473

Sequences

	Sequence		Length	Mass (Da)
	B1J1C1 [UniParc]. Last modified April 29, 2008. Version 1. Checksum: 321BC7E714EA8769	FASTA	755	82,892
	10 20 30 40 50 60 MIRRTLPAVL TLLLSTPAMA GQQTLFSFVR PASVVNVATE GAGMPQYNAE QTAEGEVLRR 70 80 90 100 110 120 VVFNPVERPT LRLSPQSGAW DWSAGQFLTL RLQSAMDWAL TVDVTVLGSD GRTLTSRIDL 130 140 150 160 170 180 PAGPAQTVMV PLKASSPLSQ GMRAGPPMPW NHEGQRLLLT SSAGEVDLKQ VVSVSLSIPG 190 200 210 220 230 240 PKVAQNLLIE KVGIQDDDLA YQAAYHALID AYGQSTRGRW PEKVVNDEQL KAADNRELQQ 250 260 270 280 290 300 LKAWLAEHHK QQLDSYGGLL AGPAFEAKGF FRTEKRDGRW HLVTPDGHPF YSLGVNAVAA 310 320 330 340 350 360 DGGRTYVAGR EGMFGVLPGE GDALGAFYGE GNNDDGNASS QGRNFKKGRW FDFYAANIHR 370 380 390 400 410 420 AHGKPCPAGG EVQPAAPCPP PSLDTARWQA HTLDRLQAWG FNTLGNWSDP ELGQAKRMPY 430 440 450 460 470 480 TLPLSIVGDY ASISTGMDWW GRMPDPFDPR FAMATERAVA IAARDHRDDP WLIGYFADNE 490 500 510 520 530 540 LAWAAPGNDP KARYGLAYGT LRLTTDVPAK RAFLKQLRDK YRNQQGLSKA WGIDLQAWEL 550 560 570 580 590 600 MEDPGFEAPL PNPEHPEIER DYQHFQQVFA ETYFKTIADS LNWHAPNHLL LGGRFAVSTP 610 620 630 640 650 660 EAVKACAEFC DVLSFNFYTL KPDDGYDFAQ LAELDKPVLV SEFQFGSRDR GPFWPGPVEV 670 680 690 700 710 720 AREEDRGPAY GNFLKAALAQ PMIVGAHWFQ YLDQPASGRL LDGENGHLGL VAITDTPYPD 730 740 750 FVEAVRKSNR KAVGQLSSLL HEGGSTTGAP TDEAP

References

[1]

"Complete sequence of Pseudomonas putida W619." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Kim E., Taghavi S., Vangronsveld D., van der Lelie D., Richardson P. Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000949 Genomic DNA. Translation: ACA71652.1.
RefSeq	YP_001748021.1. NC_010501.1.
3D structure databases
ProteinModelPortal	B1J1C1.
ModBase	Search...
Protein-protein interaction databases
STRING	B1J1C1.
Protein family/group databases
CAZy	GH50. Glycoside Hydrolase Family 50.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6110066.
GenomeReviews	Gene locus PputW619_1147 in contig CP000949_GR.
KEGG	ppw:PputW619_1147.
PATRIC	19952033. VBIPsePut93764_1149.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG336281.
OMA	LDGENGH.
ProtClustDB	CLSK866307.
Family and domain databases
InterPro	IPR013529. Glyco_hydro_42_N. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
Gene3D	G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
Pfam	PF02449. Glyco_hydro_42. 1 hit. [Graphical view]
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B1J1C1_PSEPW

Accession

Primary (citable) accession number: B1J1C1

Entry history

Integrated into UniProtKB/TrEMBL:	April 29, 2008
Last sequence update:	April 29, 2008
Last modified:	December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)