Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

DNA topoisomerase

Gene

CLD_3047

Organism
Clostridium botulinum (strain Okra / Type B1)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP-independent breakage of single-stranded DNA, followed by passage and rejoining.SAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Isomerase, TopoisomeraseSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
DNA topoisomeraseSAAS annotation (EC:5.99.1.2SAAS annotation)
Gene namesi
Ordered Locus Names:CLD_3047Imported
OrganismiClostridium botulinum (strain Okra / Type B1)Imported
Taxonomic identifieri498213 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium
Proteomesi
  • UP000008541 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliB1IKV9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2 – 145ToprimInterPro annotationAdd BLAST144

Sequence similaritiesi

Belongs to the type IA topoisomerase family.SAAS annotation

Phylogenomic databases

HOGENOMiHOG000086847.
KOiK03169.
OMAiRVMETCG.

Family and domain databases

CDDicd00186. TOP1Ac. 1 hit.
Gene3Di1.10.460.10. 2 hits.
2.70.20.10. 2 hits.
3.40.50.140. 1 hit.
InterProiIPR000380. Topo_IA.
IPR003601. Topo_IA_2.
IPR023406. Topo_IA_AS.
IPR013497. Topo_IA_cen.
IPR013824. Topo_IA_cen_sub1.
IPR013825. Topo_IA_cen_sub2.
IPR023405. Topo_IA_core_domain.
IPR003602. Topo_IA_DNA-bd_dom.
IPR006171. Toprim_domain.
[Graphical view]
PANTHERiPTHR11390. PTHR11390. 2 hits.
PfamiPF01131. Topoisom_bac. 1 hit.
PF01751. Toprim. 1 hit.
[Graphical view]
PRINTSiPR00417. PRTPISMRASEI.
SMARTiSM00437. TOP1Ac. 1 hit.
SM00436. TOP1Bc. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMiSSF56712. SSF56712. 1 hit.
PROSITEiPS00396. TOPOISOMERASE_I_PROK. 1 hit.
PS50880. TOPRIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1IKV9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKLLLAEKP SVARNIGEAL GCKTRKNGYL EGNGYIVTWA FGHLLTLYDC
60 70 80 90 100
KDYDPKLALW SFENFPYIPT EFKYKVKNDG KNRNVVDAGA KKQLEIIKEL
110 120 130 140 150
INRGDVEEII SATDYDREGE LIALLIFNYL KANKPIYRIL INEWTPTEIK
160 170 180 190 200
KGLKDLKKNE EMISLQDAGV SRQLADWVIG INFTSIATMK YTRGKGNLLN
210 220 230 240 250
IGRVLMPTLK IIYDREIEIK NFKVEEFYEL EATFKNEKGE YKGKFFYEKK
260 270 280 290 300
EKFPNKKIME KLKAEIKDKS GLVTEKTIEI KKENPPSLFN LSNLQGYITS
310 320 330 340 350
KYKGFTADKV LKVAQSLYEK KHITYPRTES TALEESIKDK AKKVLEVLKN
360 370 380 390 400
DLPFKEEIIF NTSKKVFNNA KVESHSAIMP TYIIPKNLTP DERLVYDAIK
410 420 430 440 450
NRFISQFMKE AQYENTEIVT TVPGENYERL FKTKGKILKC KGWLKLYKEK
460 470 480 490 500
KKDELLPPIE KDDEVEIKSL KIMSKKTKPP AHHTEKTLLK AMETCGKNTK
510 520 530 540 550
QNEDNEEESN ILYGYSIGTA ATRAETINKL KYAGYITPKG KSLLITDKGT
560 570 580 590 600
KLIETFPIRE LLDTDYTGKL EKKLYDMEKG KFKKEDFLKE IFNFTVNGVN
610
KIKNIRSNVI CDTRVKKDK
Length:619
Mass (Da):71,520
Last modified:April 29, 2008 - v1
Checksum:iF57FCDA6410B39C3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000939 Genomic DNA. Translation: ACA46637.1.
RefSeqiWP_015958118.1. NC_010516.1.

Genome annotation databases

EnsemblBacteriaiACA46637; ACA46637; CLD_3047.
KEGGicbb:CLD_3047.
PATRICi19403502. VBICloBot127283_1655.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000939 Genomic DNA. Translation: ACA46637.1.
RefSeqiWP_015958118.1. NC_010516.1.

3D structure databases

ProteinModelPortaliB1IKV9.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACA46637; ACA46637; CLD_3047.
KEGGicbb:CLD_3047.
PATRICi19403502. VBICloBot127283_1655.

Phylogenomic databases

HOGENOMiHOG000086847.
KOiK03169.
OMAiRVMETCG.

Family and domain databases

CDDicd00186. TOP1Ac. 1 hit.
Gene3Di1.10.460.10. 2 hits.
2.70.20.10. 2 hits.
3.40.50.140. 1 hit.
InterProiIPR000380. Topo_IA.
IPR003601. Topo_IA_2.
IPR023406. Topo_IA_AS.
IPR013497. Topo_IA_cen.
IPR013824. Topo_IA_cen_sub1.
IPR013825. Topo_IA_cen_sub2.
IPR023405. Topo_IA_core_domain.
IPR003602. Topo_IA_DNA-bd_dom.
IPR006171. Toprim_domain.
[Graphical view]
PANTHERiPTHR11390. PTHR11390. 2 hits.
PfamiPF01131. Topoisom_bac. 1 hit.
PF01751. Toprim. 1 hit.
[Graphical view]
PRINTSiPR00417. PRTPISMRASEI.
SMARTiSM00437. TOP1Ac. 1 hit.
SM00436. TOP1Bc. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMiSSF56712. SSF56712. 1 hit.
PROSITEiPS00396. TOPOISOMERASE_I_PROK. 1 hit.
PS50880. TOPRIM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiB1IKV9_CLOBK
AccessioniPrimary (citable) accession number: B1IKV9
Entry historyi
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: November 30, 2016
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.