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Protein

Ribosomal RNA small subunit methyltransferase B

Gene

Daud_1591

Organism
Desulforudis audaxviator (strain MP104C)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseSAAS annotation, Transferase

Keywords - Biological processi

rRNA processingSAAS annotation

Keywords - Ligandi

RNA-bindingSAAS annotation, S-adenosyl-L-methionineSAAS annotation

Enzyme and pathway databases

BioCyciDAUD477974:GH0B-1635-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase BSAAS annotation (EC:2.1.1.-SAAS annotation)
Gene namesi
Ordered Locus Names:Daud_1591Imported
OrganismiDesulforudis audaxviator (strain MP104C)Imported
Taxonomic identifieri477974 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeCandidatus Desulforudis
Proteomesi
  • UP000008544 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi477974.Daud_1591.

Structurei

3D structure databases

ProteinModelPortaliB1I502.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini173 – 450278SAM_MT_RSMB_NOPInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiPOG091H02E2.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1I502-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEVSAREIA LHVLKAVEAD GAYANLALNR ALEEFRPSKL DRAFATELAY
60 70 80 90 100
GTLRTLNTLD WIVSRYLQQP LGDQTVWSRN ILRLGAYQLF YMDKVPAGAA
110 120 130 140 150
CFEAVELAKK YGTPGTARFV NGVLRNVARH KDELQFPDPE TDLVTHISLK
160 170 180 190 200
YFHPTWLVKR WLTELGPEET IALCQANNTI PPNTIRVNTL RVDRDSLAVR
210 220 230 240 250
LEQEGLTVRK TRFAPEGLEI GGFVSMRALP SFQQGLFQIQ DESSMLVAHA
260 270 280 290 300
VNPARGVRIL DACSAPGGKT THLAQLMENE GIIKALDIHQ HKLKLVSDNC
310 320 330 340 350
RRLGIDNVET ELLDARDLPG EFEGWADFVL VDAPCSGLGV LRRRPDARWR
360 370 380 390 400
KEPGQITGLV RLQEAILAGA AQCVRAGGVL VYSTCTITYE ENLGQVQSFL
410 420 430 440 450
AHHPDFLLEN LRPFLPAGLG EEQMARGYLE IFPHTHEGMD GFFIARMRRR

HL
Length:452
Mass (Da):50,540
Last modified:April 29, 2008 - v1
Checksum:i2C5FAF281BB9190C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000860 Genomic DNA. Translation: ACA60093.1.
RefSeqiWP_012302674.1. NC_010424.1.

Genome annotation databases

EnsemblBacteriaiACA60093; ACA60093; Daud_1591.
KEGGidau:Daud_1591.
PATRICi31970052. VBICanDes92303_1648.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000860 Genomic DNA. Translation: ACA60093.1.
RefSeqiWP_012302674.1. NC_010424.1.

3D structure databases

ProteinModelPortaliB1I502.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi477974.Daud_1591.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACA60093; ACA60093; Daud_1591.
KEGGidau:Daud_1591.
PATRICi31970052. VBICanDes92303_1648.

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiPOG091H02E2.

Enzyme and pathway databases

BioCyciDAUD477974:GH0B-1635-MONOMER.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiB1I502_DESAP
AccessioniPrimary (citable) accession number: B1I502
Entry historyi
Integrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: September 7, 2016
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.