B1I1J0 (RL23_DESAP) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L23

Gene names

Name:	rplW
Ordered Locus Names:	Daud_0227

Organism

Desulforudis audaxviator (strain MP104C) [Complete proteome] [HAMAP]

Taxonomic identifier

477974 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Peptococcaceae › Candidatus Desulforudis › Candidatus Desulforudis audaxviator

Protein attributes

Sequence length	95 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP-Rule MF_01369
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity.
Sequence similarities	Belongs to the ribosomal protein L23P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	nucleotide binding Inferred from electronic annotation. Source: InterPro rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 95	95	50S ribosomal protein L23 HAMAP-Rule MF_01369		PRO_1000184083

Sequences

	Sequence		Length	Mass (Da)
	B1I1J0 [UniParc]. Last modified April 29, 2008. Version 1. Checksum: 3EA1030EB330B962	FASTA	95	10,947
	10 20 30 40 50 60 MKFAHDILRK PLISEKSMSL TEGNKYTFIV DPRANKTEIK KAVEEIFKVK VLKVNTIRVK 70 80 90 GKQVRRRNIL GRKPETKKAV VTLRPGDKIE IFEGV

References

[1]

"Complete sequence of chromosome of Desulforudis audaxviator MP104C." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Bruce D., Pitluck S., Lowry S.R., Larimer F., Land M.L., Hauser L., Kyrpides N., Ivanova N.N., Richardson P. Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MP104C.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000860 Genomic DNA. Translation: ACA58788.1.
RefSeq	YP_001716420.1. NC_010424.1.
3D structure databases
ProteinModelPortal	B1I1J0.
SMR	B1I1J0. Positions 1-95.
ModBase	Search...
Protein-protein interaction databases
STRING	477974.Daud_0227.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACA58788; ACA58788; Daud_0227.
GeneID	6027256.
KEGG	dau:Daud_0227.
PATRIC	31967169. VBICanDes92303_0233.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0089.
HOGENOM	HOG000231366.
KO	K02892.
OMA	ITERSAD.
Enzyme and pathway databases
BioCyc	DAUD477974:GH0B-241-MONOMER.
Family and domain databases
Gene3D	3.30.70.330. 1 hit.
HAMAP	MF_01369_B. Ribosomal_L23_B.
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR012678. Ribosomal_L23/L15e_core_dom. IPR013025. Ribosomal_L25/23. [Graphical view]
Pfam	PF00276. Ribosomal_L23. 1 hit. [Graphical view]
SUPFAM	SSF54189. L23_L15e_core. 1 hit.
PROSITE	PS00050. RIBOSOMAL_L23. False negative. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL23_DESAP

Accession

Primary (citable) accession number: B1I1J0

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 28, 2009
Last sequence update:	April 29, 2008
Last modified:	May 1, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program