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B1H2Y8

- B1H2Y8_XENTR

UniProt

B1H2Y8 - B1H2Y8_XENTR

Protein
Submitted name:

LOC100145511 protein

Gene

gad1.2

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (29 Apr 2008)
      Previous versions | rss
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    Functioni

    Cofactori

    Pyridoxal phosphate.UniRule annotation

    GO - Molecular functioni

    1. carboxy-lyase activity Source: InterPro
    2. pyridoxal phosphate binding Source: InterPro

    GO - Biological processi

    1. carboxylic acid metabolic process Source: InterPro

    Keywords - Molecular functioni

    LyaseUniRule annotation

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    LOC100145511 proteinImported
    Gene namesi
    Name:gad1.2Imported
    Synonyms:LOC100145511Imported
    OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
    Taxonomic identifieri8364 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana

    Organism-specific databases

    XenbaseiXB-GENE-5830282. gad1.2.

    Expressioni

    Gene expression databases

    BgeeiB1H2Y8.

    Interactioni

    Protein-protein interaction databases

    STRINGi8364.ENSXETP00000012900.

    Structurei

    3D structure databases

    ProteinModelPortaliB1H2Y8.
    SMRiB1H2Y8. Positions 41-540.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the group II decarboxylase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0076.
    HOGENOMiHOG000005382.
    HOVERGENiHBG004980.
    KOiK01580.

    Family and domain databases

    Gene3Di3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProiIPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    IPR021115. Pyridoxal-P_BS.
    [Graphical view]
    PfamiPF00282. Pyridoxal_deC. 1 hit.
    [Graphical view]
    SUPFAMiSSF53383. SSF53383. 1 hit.
    PROSITEiPS00392. DDC_GAD_HDC_YDC. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B1H2Y8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEKVGTCADE GNSQPKLLHE KHICQEKANE ERIMHSEKYI SDFSNIYSTD    50
    LLPTRNGEKC TEQFLIEVLR ILLNHIKKTY DGESKVLDFH HPHQLLEGLE 100
    GFNLELSDQP EPLEQILVDC SDTLKYSIKT GHPRYFNQLS CGLDIIGLAG 150
    EWLTATANTN MFTYEIAPVF IIMEEIVLKK MQEIIGWGEN EADGIFSPGG 200
    TISNLYSLQA ARYKYFPMVK TKGMAALPQI VIFTSEQSHY SFKKASAILG 250
    IGTDNVIAIK CDERGKMIPS DLEDKILKAK RQGQHPFYVS ATAGTTVYGA 300
    FDPLITIADI CKRYGLWMHV DAAWGGGLLL SKKHRYKMNG IERANSVTWN 350
    PHKIMGVPLQ CSAILIRQKG LLQACNQQCA DYLFQMDKPY DTAYDTGDKT 400
    IQCGRHVDIF KLWLMWKAKG SCGFELQINR CLELSEYLYN KLQSKSNFEL 450
    VFRDKPEYTN VCFWYIPPSL EHVPRDKEWK ARLHKIAPQI KARMMEEGTV 500
    MVSYQPQGDK PNFFRMVFSN PASKKSDVDF LLEEIERLGK GL 542
    Length:542
    Mass (Da):61,821
    Last modified:April 29, 2008 - v1
    Checksum:i3945B3426A7D4656
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC161181 mRNA. Translation: AAI61181.1.
    RefSeqiNP_001120426.1. NM_001126954.1.
    UniGeneiStr.6300.

    Genome annotation databases

    GeneIDi100145511.
    KEGGixtr:100145511.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC161181 mRNA. Translation: AAI61181.1 .
    RefSeqi NP_001120426.1. NM_001126954.1.
    UniGenei Str.6300.

    3D structure databases

    ProteinModelPortali B1H2Y8.
    SMRi B1H2Y8. Positions 41-540.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 8364.ENSXETP00000012900.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 100145511.
    KEGGi xtr:100145511.

    Organism-specific databases

    CTDi 100137647.
    Xenbasei XB-GENE-5830282. gad1.2.

    Phylogenomic databases

    eggNOGi COG0076.
    HOGENOMi HOG000005382.
    HOVERGENi HBG004980.
    KOi K01580.

    Gene expression databases

    Bgeei B1H2Y8.

    Family and domain databases

    Gene3Di 3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProi IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    IPR021115. Pyridoxal-P_BS.
    [Graphical view ]
    Pfami PF00282. Pyridoxal_deC. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53383. SSF53383. 1 hit.
    PROSITEi PS00392. DDC_GAD_HDC_YDC. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. NIH - Xenopus Gene Collection (XGC) project
      Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: N6Imported.
      Tissue: OviductImported.

    Entry informationi

    Entry nameiB1H2Y8_XENTR
    AccessioniPrimary (citable) accession number: B1H2Y8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 29, 2008
    Last sequence update: April 29, 2008
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)