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Protein

RAB6-interacting golgin

Gene

Gorab

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
RAB6-interacting golgin
Alternative name(s):
N-terminal kinase-like-binding protein 1
Short name:
NTKL-BP1
Short name:
NTKL-binding protein 1
SCY1-like 1-binding protein 1
Short name:
SCYL1-BP1
Short name:
SCYL1-binding protein 1
Gene namesi
Name:Gorab
Synonyms:Ntklbp1, Scyl1bp1
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 13

Organism-specific databases

RGDi1564990. Gorab.

Subcellular locationi

  • Cytoplasm By similarity
  • Golgi apparatus By similarity

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Golgi apparatus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 368368RAB6-interacting golginPRO_0000367459Add
BLAST

Proteomic databases

PaxDbiB1H222.
PRIDEiB1H222.

Expressioni

Gene expression databases

GenevisibleiB1H222. RN.

Interactioni

Subunit structurei

Interacts with RCHY1, RAB6A/RAB6 and SCYL1.By similarity

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000005148.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni188 – 368181Necessary for interaction with RCHY1By similarityAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili145 – 304160Sequence analysisAdd
BLAST

Sequence similaritiesi

Belongs to the GORAB family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiENOG410IJC7. Eukaryota.
ENOG4111VTM. LUCA.
GeneTreeiENSGT00390000014886.
HOGENOMiHOG000112758.
InParanoidiB1H222.
KOiK19748.
OMAiHLTEHLC.
OrthoDBiEOG7RJPT4.
PhylomeDBiB1H222.
TreeFamiTF324839.

Family and domain databases

InterProiIPR007033. GORAB.
[Graphical view]
PANTHERiPTHR21470:SF2. PTHR21470:SF2. 1 hit.
PfamiPF04949. Transcrip_act. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1H222-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAQGWAGFSE EELRRLKQNK DPFEPQRRLP VKKTRQQLQR EKALLEQSQK
60 70 80 90 100
LGLQDGSASL LPEQLLSTPK QRASSQKPPP SSPAVPSPLT LTSSTGDGEL
110 120 130 140 150
HGGESQLQEP GLENSHHGSR SAEIQTPKPD CKVEKKKMEL QEKSRWEVLQ
160 170 180 190 200
QEQRLMEEKN KRKKALLAQA IAERSRRTQA ETMKLKRIQK ELQALDDMVS
210 220 230 240 250
ADIGILRNRI DQASLEYSYA RKRFDRAEAE YVTAKLDLQR KTETKEQLTE
260 270 280 290 300
HLCTIIQQNE LRKAQKLEEL MRQLDVQADD EALELELEVE QLLREQEAEA
310 320 330 340 350
ARQMAPVERL SQPDGEGVSS ELTEENKEPQ KPATSPETDK SGKCCSSSPR
360
RLDCPDPGAQ NFPAAVAT
Length:368
Mass (Da):41,632
Last modified:March 24, 2009 - v2
Checksum:i361BB58FB0A1AF15
GO

Sequence cautioni

The sequence AAI60825.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC086370 mRNA. Translation: AAH86370.1.
BC160825 mRNA. Translation: AAI60825.1. Different initiation.
RefSeqiNP_001094033.1. NM_001100563.1.
UniGeneiRn.45710.

Genome annotation databases

EnsembliENSRNOT00000005148; ENSRNOP00000005148; ENSRNOG00000003861.
GeneIDi304923.
KEGGirno:304923.
UCSCiRGD:1564990. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC086370 mRNA. Translation: AAH86370.1.
BC160825 mRNA. Translation: AAI60825.1. Different initiation.
RefSeqiNP_001094033.1. NM_001100563.1.
UniGeneiRn.45710.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000005148.

Proteomic databases

PaxDbiB1H222.
PRIDEiB1H222.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000005148; ENSRNOP00000005148; ENSRNOG00000003861.
GeneIDi304923.
KEGGirno:304923.
UCSCiRGD:1564990. rat.

Organism-specific databases

CTDi92344.
RGDi1564990. Gorab.

Phylogenomic databases

eggNOGiENOG410IJC7. Eukaryota.
ENOG4111VTM. LUCA.
GeneTreeiENSGT00390000014886.
HOGENOMiHOG000112758.
InParanoidiB1H222.
KOiK19748.
OMAiHLTEHLC.
OrthoDBiEOG7RJPT4.
PhylomeDBiB1H222.
TreeFamiTF324839.

Miscellaneous databases

NextBioi653849.
PROiB1H222.

Gene expression databases

GenevisibleiB1H222. RN.

Family and domain databases

InterProiIPR007033. GORAB.
[Graphical view]
PANTHERiPTHR21470:SF2. PTHR21470:SF2. 1 hit.
PfamiPF04949. Transcrip_act. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Placenta and Testis.

Entry informationi

Entry nameiGORAB_RAT
AccessioniPrimary (citable) accession number: B1H222
Secondary accession number(s): Q5RK15
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 24, 2009
Last sequence update: March 24, 2009
Last modified: March 16, 2016
This is version 51 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.