ID NFX1_MOUSE Reviewed; 1114 AA. AC B1AY10; Q3U2A7; Q3UK95; Q3UMW1; Q7TPT4; Q8CC59; Q9DBC8; Q9JKW7; DT 20-MAY-2008, integrated into UniProtKB/Swiss-Prot. DT 08-APR-2008, sequence version 1. DT 27-MAR-2024, entry version 117. DE RecName: Full=Transcriptional repressor NF-X1; DE Short=m-Nfx.1; DE EC=2.3.2.-; DE AltName: Full=Nuclear transcription factor, X box-binding protein 1; GN Name=Nfx1; OS Mus musculus (Mouse). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. OX NCBI_TaxID=10090; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, TISSUE SPECIFICITY, AND RP DEVELOPMENTAL STAGE. RX PubMed=12047746; DOI=10.1046/j.1365-2567.2002.01416.x; RA Arlotta P., Miyazaki D., Copeland N.G., Gilbert D.J., Jenkins N.A., RA Ono S.J.; RT "Murine NFX.1: isolation and characterization of its messenger RNA, mapping RT of its chromosomal location and assessment of its developmental RT expression."; RL Immunology 106:173-181(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 2 AND 3). RC STRAIN=C57BL/6J, and NOD; RC TISSUE=Diencephalon, Liver, Lung, and Placenta; RX PubMed=16141072; DOI=10.1126/science.1112014; RA Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., RA Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., RA Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J., RA Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., RA Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., RA Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., RA Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., RA Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., RA Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., RA Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., RA Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., RA Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., RA Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., RA Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., RA Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., RA Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., RA Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., RA Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., RA Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., RA Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., RA Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., RA Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., RA Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., RA Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., RA Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., RA van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., RA Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., RA Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., RA Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., RA Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., RA Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., RA Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., RA Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., RA Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.; RT "The transcriptional landscape of the mammalian genome."; RL Science 309:1559-1563(2005). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=C57BL/6J; RX PubMed=19468303; DOI=10.1371/journal.pbio.1000112; RA Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., RA Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., RA Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S., RA Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., RA Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., RA Eichler E.E., Ponting C.P.; RT "Lineage-specific biology revealed by a finished genome assembly of the RT mouse."; RL PLoS Biol. 7:E1000112-E1000112(2009). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC STRAIN=C57BL/6J; TISSUE=Egg; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [5] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-81; SER-126 AND SER-130, AND RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Brain, Kidney, Pancreas, and Spleen; RX PubMed=21183079; DOI=10.1016/j.cell.2010.12.001; RA Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R., RA Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.; RT "A tissue-specific atlas of mouse protein phosphorylation and expression."; RL Cell 143:1174-1189(2010). CC -!- FUNCTION: Binds to the X-box motif of MHC class II genes and represses CC their expression. May play an important role in regulating the duration CC of an inflammatory response by limiting the period in which MHC class CC II molecules are induced by interferon-gamma. Together with PABPC1 or CC PABPC4, acts as a coactivator for TERT expression. Mediates E2- CC dependent ubiquitination. {ECO:0000269|PubMed:12047746}. CC -!- SUBUNIT: Interacts with PABPC1 and PABPC4. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=3; CC Name=1; CC IsoId=B1AY10-1; Sequence=Displayed; CC Name=2; CC IsoId=B1AY10-2; Sequence=VSP_033694, VSP_033695; CC Name=3; CC IsoId=B1AY10-3; Sequence=VSP_033693, VSP_033696; CC -!- TISSUE SPECIFICITY: Ubiquitously expressed, with highest levels in CC thymus. {ECO:0000269|PubMed:12047746}. CC -!- DEVELOPMENTAL STAGE: Ubiquitously expressed at 12 dpc and 14 dpc. CC {ECO:0000269|PubMed:12047746}. CC -!- DOMAIN: The RING-type zinc finger domain interacts with an ubiquitin- CC conjugating enzyme (E2) and facilitates ubiquitination. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the NFX1 family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAF34700.1; Type=Frameshift; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AF223576; AAF34700.1; ALT_FRAME; mRNA. DR EMBL; AK005038; BAB23765.1; -; mRNA. DR EMBL; AK033850; BAC28494.1; -; mRNA. DR EMBL; AK144647; BAE25987.1; -; mRNA. DR EMBL; AK146108; BAE26907.1; -; mRNA. DR EMBL; AK155387; BAE33235.1; -; mRNA. DR EMBL; AL837521; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; BC053709; AAH53709.1; -; mRNA. DR CCDS; CCDS18054.1; -. [B1AY10-1] DR CCDS; CCDS71359.1; -. [B1AY10-2] DR CCDS; CCDS71360.1; -. [B1AY10-3] DR RefSeq; NP_001277377.1; NM_001290448.1. [B1AY10-3] DR RefSeq; NP_001277378.1; NM_001290449.1. [B1AY10-2] DR RefSeq; NP_076228.2; NM_023739.3. [B1AY10-1] DR AlphaFoldDB; B1AY10; -. DR SMR; B1AY10; -. DR BioGRID; 216539; 18. DR IntAct; B1AY10; 2. DR MINT; B1AY10; -. DR STRING; 10090.ENSMUSP00000095747; -. DR iPTMnet; B1AY10; -. DR PhosphoSitePlus; B1AY10; -. DR SwissPalm; B1AY10; -. DR EPD; B1AY10; -. DR jPOST; B1AY10; -. DR MaxQB; B1AY10; -. DR PaxDb; 10090-ENSMUSP00000095747; -. DR PeptideAtlas; B1AY10; -. DR ProteomicsDB; 287501; -. [B1AY10-1] DR ProteomicsDB; 287502; -. [B1AY10-2] DR ProteomicsDB; 287503; -. [B1AY10-3] DR Pumba; B1AY10; -. DR Antibodypedia; 25201; 163 antibodies from 29 providers. DR DNASU; 74164; -. DR Ensembl; ENSMUST00000030133.15; ENSMUSP00000030133.9; ENSMUSG00000028423.16. [B1AY10-3] DR Ensembl; ENSMUST00000091614.7; ENSMUSP00000089203.7; ENSMUSG00000028423.16. [B1AY10-2] DR Ensembl; ENSMUST00000098143.11; ENSMUSP00000095747.5; ENSMUSG00000028423.16. [B1AY10-1] DR GeneID; 74164; -. DR KEGG; mmu:74164; -. DR UCSC; uc008sic.2; mouse. [B1AY10-2] DR UCSC; uc008sid.2; mouse. [B1AY10-3] DR UCSC; uc008sie.2; mouse. [B1AY10-1] DR AGR; MGI:1921414; -. DR CTD; 4799; -. DR MGI; MGI:1921414; Nfx1. DR VEuPathDB; HostDB:ENSMUSG00000028423; -. DR eggNOG; KOG1952; Eukaryota. DR GeneTree; ENSGT00940000156325; -. DR HOGENOM; CLU_005714_1_2_1; -. DR InParanoid; B1AY10; -. DR OMA; PRTSCED; -. DR OrthoDB; 1412at2759; -. DR PhylomeDB; B1AY10; -. DR TreeFam; TF105889; -. DR BioGRID-ORCS; 74164; 2 hits in 81 CRISPR screens. DR ChiTaRS; Nfx1; mouse. DR PRO; PR:B1AY10; -. DR Proteomes; UP000000589; Chromosome 4. DR RNAct; B1AY10; Protein. DR Bgee; ENSMUSG00000028423; Expressed in cumulus cell and 258 other cell types or tissues. DR GO; GO:0005829; C:cytosol; ISO:MGI. DR GO; GO:0005730; C:nucleolus; ISO:MGI. DR GO; GO:0005654; C:nucleoplasm; ISO:MGI. DR GO; GO:0005634; C:nucleus; IBA:GO_Central. DR GO; GO:0005886; C:plasma membrane; ISO:MGI. DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central. DR GO; GO:0001227; F:DNA-binding transcription repressor activity, RNA polymerase II-specific; ISO:MGI. DR GO; GO:0000977; F:RNA polymerase II transcription regulatory region sequence-specific DNA binding; ISO:MGI. DR GO; GO:0061630; F:ubiquitin protein ligase activity; ISO:MGI. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0045347; P:negative regulation of MHC class II biosynthetic process; IDA:MGI. DR GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IDA:MGI. DR GO; GO:0051865; P:protein autoubiquitination; ISO:MGI. DR CDD; cd06008; NF-X1-zinc-finger; 6. DR CDD; cd02643; R3H_NF-X1; 1. DR CDD; cd16696; RING-CH-C4HC3_NFX1; 1. DR Gene3D; 3.30.1370.50; R3H-like domain; 1. DR InterPro; IPR034078; NFX1_fam. DR InterPro; IPR001374; R3H_dom. DR InterPro; IPR036867; R3H_dom_sf. DR InterPro; IPR034076; R3H_NF-X1. DR InterPro; IPR000967; Znf_NFX1. DR InterPro; IPR019787; Znf_PHD-finger. DR InterPro; IPR001841; Znf_RING. DR PANTHER; PTHR12360; NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1; 1. DR PANTHER; PTHR12360:SF12; TRANSCRIPTIONAL REPRESSOR NF-X1; 1. DR Pfam; PF01424; R3H; 1. DR Pfam; PF01422; zf-NF-X1; 7. DR SMART; SM00393; R3H; 1. DR SMART; SM00438; ZnF_NFX; 9. DR SUPFAM; SSF82708; R3H domain; 1. DR SUPFAM; SSF57850; RING/U-box; 1. DR PROSITE; PS51061; R3H; 1. DR PROSITE; PS50089; ZF_RING_2; 1. DR Genevisible; B1AY10; MM. PE 1: Evidence at protein level; KW Alternative splicing; DNA-binding; Metal-binding; Nucleus; Phosphoprotein; KW Reference proteome; Repeat; Repressor; Transcription; KW Transcription regulation; Transferase; Ubl conjugation pathway; Zinc; KW Zinc-finger. FT CHAIN 1..1114 FT /note="Transcriptional repressor NF-X1" FT /id="PRO_0000334614" FT DOMAIN 988..1056 FT /note="R3H" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00382" FT ZN_FING 352..403 FT /note="RING-type; atypical" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00175" FT ZN_FING 447..465 FT /note="NF-X1-type 1" FT ZN_FING 500..519 FT /note="NF-X1-type 2" FT ZN_FING 561..580 FT /note="NF-X1-type 3" FT ZN_FING 626..649 FT /note="NF-X1-type 4" FT ZN_FING 688..707 FT /note="NF-X1-type 5" FT ZN_FING 715..734 FT /note="NF-X1-type 6" FT ZN_FING 826..848 FT /note="NF-X1-type 7" FT ZN_FING 857..878 FT /note="NF-X1-type 8" FT REGION 9..26 FT /note="Interaction with PABPC1 and PABC4" FT /evidence="ECO:0000250" FT REGION 20..220 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 232..287 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 299..325 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 1071..1095 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 27..48 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 70..106 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 118..142 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 143..161 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 181..205 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 232..257 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 50 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q12986" FT MOD_RES 81 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 92 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q12986" FT MOD_RES 126 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 130 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 147 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q12986" FT MOD_RES 320 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q12986" FT VAR_SEQ 803..818 FT /note="LRSNIPCHLVDISCGL -> ELTIKKLWTFKETLDF (in isoform 3)" FT /evidence="ECO:0000303|PubMed:16141072" FT /id="VSP_033693" FT VAR_SEQ 803..804 FT /note="LR -> RQ (in isoform 2)" FT /evidence="ECO:0000303|PubMed:15489334, FT ECO:0000303|PubMed:16141072" FT /id="VSP_033694" FT VAR_SEQ 805..1114 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:15489334, FT ECO:0000303|PubMed:16141072" FT /id="VSP_033695" FT VAR_SEQ 819..1114 FT /note="Missing (in isoform 3)" FT /evidence="ECO:0000303|PubMed:16141072" FT /id="VSP_033696" FT CONFLICT 49 FT /note="S -> N (in Ref. 2; BAC28494)" FT /evidence="ECO:0000305" FT CONFLICT 141 FT /note="T -> A (in Ref. 2; BAE33235)" FT /evidence="ECO:0000305" FT CONFLICT 273 FT /note="S -> P (in Ref. 4; AAH53709)" FT /evidence="ECO:0000305" FT CONFLICT 455 FT /note="C -> Y (in Ref. 2; BAE33235)" FT /evidence="ECO:0000305" FT CONFLICT 590 FT /note="C -> R (in Ref. 4; AAH53709)" FT /evidence="ECO:0000305" SQ SEQUENCE 1114 AA; 123811 MW; A31013ACC6FB31F4 CRC64; MAEAPPVSGT FKFNTDAAEF IPQERKTSGL NCGTQRRLDS SRIGRRNYSS SPPCHLPRHI PYEDISAVHQ HSYASGSKPK SPQGFFQSSN KSLKNHGLQN QPWQKARNEK HQNRNKKAQG LSEQTSDTSS LESVARSESG TNPREHSPSE SEKEVVIADP RGAKPKKAAQ LTYNYGRGPK AKGRLRSEWG NRMSPKSEDE NTRPVAISHT DSSDASCRKP VVDPCVCRRN EQRRYPQKRP PWEVEGARPR PGRNPPKQES QRHINAGPKT NMSPIPKDNL RERPTKSACD TGNLAVVSKS SRRVNQEKTA VRRQDPQVLS PFPRGKQNHM LKNVETHTGS LIEQLTTEKY ECMVCCELVQ VTAPVWSCQS CFHVFHLNCI KKWARSPASH ADGQSGWRCP ACQNVSAHVP NTYTCFCGKV KNPEWSRNEI PHSCGEVCRK KQPGQDCPHS CNLLCHPGPC PPCPAFTTKT CECGRTRHTV RCGQPVSVHC SNACENILNC GQHHCAELCH GGQCQPCRII LNQVCYCGST SRDVLCGTDV GKSDGFGDFS CLKICGKDLK CGSHTCSQVC HPQPCQPCPR LPHLVRYCPC GQTPLSQLLE HGSNARKTCM DPVPSCGKVC GKPLACGSSD FIHTCEKLCH EGDCGPCSRT SVISCRCSFR TKELPCTSLK SEDATFMCDK RCNKKRLCGR HKCNEICCVD KEHKCPLICG RKLRCGLHRC EEPCHRGNCQ TCWQASFDEL TCHCGASVIY PPVPCGTRPP ECTQTCARIH ECDHPVYHSC HSEEKCPPCT FLTQKWCMGK HELRSNIPCH LVDISCGLPC SAMLPCGMHK CQRLCHKGEC LVDEACKQPC TTPRGDCGHP CMAPCHPSLP CPVTACKAKV ELQCECGRRK EMVICSEASG TYQRIVAISM ASKITDMQLG DSVEISKLIT KKEVQQARLQ CDEECAALER RKRLAEAFDI TDDSDPFNVR SSASKFSDSL KDDARKDLKF VSDVEKEMET LVEAVNKGKN NKKSHCFPPM NRDHRRIIHD LAQVYGLESI SYDSEPKRNV VVTAVRGKSV CPPTTLTSVI ERETQTRPPP PIPHHRHQAD KAPGSSTLQK IVKEAVIDYF DVQD //