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B1AWB9

- B1AWB9_MOUSE

UniProt

B1AWB9 - B1AWB9_MOUSE

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Protein
Submitted name: Collagen, type V, alpha 1
Gene
Col5a1
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. extracellular matrix structural constituent Source: MGI
  2. heparin binding Source: Ensembl
  3. protein binding Source: MGI

GO - Biological processi

  1. blood vessel development Source: MGI
  2. cell adhesion Source: Ensembl
  3. collagen biosynthetic process Source: Ensembl
  4. collagen fibril organization Source: MGI
  5. extracellular fibril organization Source: Ensembl
  6. eye morphogenesis Source: Ensembl
  7. heart morphogenesis Source: MGI
  8. integrin biosynthetic process Source: Ensembl
  9. regulation of cellular component organization Source: MGI
  10. skin development Source: MGI
  11. tendon development Source: MGI
  12. wound healing, spreading of epidermal cells Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Collagen, type V, alpha 1Imported
Gene namesi
Name:Col5a1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:88457. Col5a1.

Subcellular locationi

GO - Cellular componenti

  1. basement membrane Source: MGI
  2. collagen trimer Source: MGI
  3. collagen type V trimer Source: Ensembl
  4. extracellular matrix Source: MGI
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriB1AWB9.

Family & Domainsi

Keywords - Domaini

CollagenImported

Phylogenomic databases

HOVERGENiHBG004933.
InParanoidiB1AWB9.
KOiK06236.
OMAiPIGVVQM.

Family and domain databases

Gene3Di2.60.120.200. 1 hit.
InterProiIPR008160. Collagen.
IPR008985. ConA-like_lec_gl_sf.
IPR013320. ConA-like_subgrp.
IPR000885. Fib_collagen_C.
IPR001791. Laminin_G.
[Graphical view]
PfamiPF01410. COLFI. 1 hit.
PF01391. Collagen. 6 hits.
PF02210. Laminin_G_2. 1 hit.
[Graphical view]
ProDomiPD002078. Fib_collagen_C. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00038. COLFI. 1 hit.
SM00282. LamG. 1 hit.
SM00210. TSPN. 1 hit.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 1 hit.
PROSITEiPS51461. NC1_FIB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1AWB9-1 [UniParc]FASTAAdd to Basket

« Hide

MDVHTRWKAA RPGALLLSSP LLLFLLLLWA PPSSRAAQPA DLLEMLDFHN     50
LPSGVTKTTG FCATRRSSSE PDVAYRVSKD AQLSMPTKQL YPESGFPEDF 100
SILTTVKAKK GSQAFLVSIY NEQGIQQLGL ELGRSPVFLY EDHTGKPGPE 150
EYPLFPGINL SDGKWHRIAL SVYKKNVTLI LDCKKKITKF LSRSDHPIID 200
TNGIVMFGSR ILDDEIFEGD IQQLLFVSDN RAAYDYCEHY SPDCDTAVPD 250
TPQSQDPNPD EYYPEGEGET YYYEYPYYED PEDPGKEPAP TQKPVEAARE 300
TTEVPEEQTQ PLPEAPTVPE TSDTADKEDS LGIGDYDYVP PDDYYTPPPY 350
EDFGYGEGVE NPDQPTNPDS GAEVPTSTTV TSNTSNPAPG EGKDDLGGEF 400
TEETIKNLEE NYYDPYFDPD SDSSVSPSEI GPGMPANQDT IFEGIGGPRG 450
EKGQKGEPAI IEPGMLIEGP PGPEGPAGLP GPPGTTGPTG QMGDPGERGP 500
PGRPGLPGAD GLPGPPGTML MLPFRFGGGG DAGSKGPMVS AQESQAQAIL 550
QQARLALRGP AGPMGLTGRP GPMGPPGSGG LKGEPGDMGP QGPRGVQGPP 600
GPTGKPGRRG RAGSDGARGM PGQTGPKGDR GFDGLAGLPG EKGHRGDPGP 650
SGPPGIPGDD GERGDDGEVG PRGLPGEPGP RGLLGPKGPP GPPGPPGVTG 700
MDGQPGPKGN VGPQGEPGPP GQQGNPGAQG LPGPQGAIGP PGEKGPLGKP 750
GLPGMPGADG PPGHPGKEGP PGEKGGQGPP GPQGPIGYPG PRGVKGADGI 800
RGLKGTKGEK GEDGFPGFKG DMGIKGDRGE IGPPGPRGED GPEGPKGRGG 850
PNGDPGPLGP TGEKGKLGVP GLPGYPGRQG PKGSIGFPGF PGANGEKGGR 900
GTPGKPGPRG QRGPTGPRGE RGPRGITGKP GPKGNSGGDG PAGPPGERGP 950
NGPQGPTGFP GPKGPPGPPG KDGLPGHPGQ RGETGFQGKT GPPGPPGVVG 1000
PQGPTGETGP MGERGHPGPP GPPGEQGLPG AAGKEGTKGD PGPAGLPGKD 1050
GPPGLRGFPG DRGLPGPVGA LGLKGSEGPP GPPGPAGSPG ERGPAGAAGP 1100
IGIPGRPGPQ GPPGPAGEKG LPGEKGPQGP AGRDGLQGPV GLPGPAGPVG 1150
PPGEDGDKGE IGEPGQKGSK GDKGEQGPPG PTGPQGPIGQ PGPSGADGEP 1200
GPRGQQGLFG QKGDEGSRGF PGPPGPVGLQ GLPGPPGEKG ETGDVGQMGP 1250
PGPPGPRGPS GAPGADGPQG PPGGIGNPGA VGEKGEPGEA GDPGLPGEGG 1300
PLGPKGERGE KGEAGPSGAA GPPGPKGPPG DDGPKGSPGP VGFPGDPGPP 1350
GEPGPAGQDG PPGDKGDDGE PGQTGSPGPT GEPGPSGPPG KRGPPGPAGP 1400
EGRQGEKGAK GEAGLEGPPG KTGPIGPQGA PGKPGPDGLR GIPGPVGEQG 1450
LPGSPGPDGP PGPMGPPGLP GLKGDSGPKG EKGHPGLIGL IGPPGEQGEK 1500
GDRGLPGPQG SSGPKGDQGI TGPSGPLGPP GPPGLPGPPG PKGAKGSSGP 1550
TGPKGEAGHP GLPGPPGPPG EVIQPLPIQA SRTRRNIDAS QLLDDGAGES 1600
YVDYADGMEE IFGSLNSLKL EIEQMKRPLG TQQNPARTCK DLQLCHPDFP 1650
DGEYWVDPNQ GCSRDSFKVY CNFTAGGSTC VFPDKKSEGA RITSWPKENP 1700
GSWFSEFKRG KLLSYVDAEG NPVGVVQMTF LRLLSASAHQ NVTYNCYQSV 1750
AWQDAATGSY DKAIRFLGSN DEEMSYDNNP YIRALVDGCA TKKGYQKTVL 1800
EIDTPKVEQV PIVDIMFNDF GEASQKFGFE VGPACFLG 1838
Length:1,838
Mass (Da):183,677
Last modified:April 8, 2008 - v1
Checksum:iD20F4E5198A09ECF
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC138447 mRNA. Translation: AAI38448.1.
BC138449 mRNA. Translation: AAI38450.1.
RefSeqiNP_056549.2. NM_015734.2.
UniGeneiMm.7281.

Genome annotation databases

GeneIDi12831.
KEGGimmu:12831.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC138447 mRNA. Translation: AAI38448.1 .
BC138449 mRNA. Translation: AAI38450.1 .
RefSeqi NP_056549.2. NM_015734.2.
UniGenei Mm.7281.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 12831.
KEGGi mmu:12831.

Organism-specific databases

CTDi 1289.
MGIi MGI:88457. Col5a1.

Phylogenomic databases

HOVERGENi HBG004933.
InParanoidi B1AWB9.
KOi K06236.
OMAi PIGVVQM.

Miscellaneous databases

NextBioi 282334.
SOURCEi Search...

Gene expression databases

Genevestigatori B1AWB9.

Family and domain databases

Gene3Di 2.60.120.200. 1 hit.
InterProi IPR008160. Collagen.
IPR008985. ConA-like_lec_gl_sf.
IPR013320. ConA-like_subgrp.
IPR000885. Fib_collagen_C.
IPR001791. Laminin_G.
[Graphical view ]
Pfami PF01410. COLFI. 1 hit.
PF01391. Collagen. 6 hits.
PF02210. Laminin_G_2. 1 hit.
[Graphical view ]
ProDomi PD002078. Fib_collagen_C. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SMARTi SM00038. COLFI. 1 hit.
SM00282. LamG. 1 hit.
SM00210. TSPN. 1 hit.
[Graphical view ]
SUPFAMi SSF49899. SSF49899. 1 hit.
PROSITEi PS51461. NC1_FIB. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: BrainImported.

Entry informationi

Entry nameiB1AWB9_MOUSE
AccessioniPrimary (citable) accession number: B1AWB9
Entry historyi
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: July 9, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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