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B1AVY2 (B1AVY2_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Gabra3 Ensembl ENSMUSP00000110201 MGI 95615
OrganismMus musculus (Mouse) [Reference proteome] Ensembl ENSMUSP00000110201
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length533 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the ligand-gated ion channel (TC 1.A.9) family. [View classification] RuleBase RU000687

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSMUSP00000110201

Sequences

Sequence LengthMass (Da)Tools
B1AVY2 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: 5B82129252D544CF

FASTA53359,912
        10         20         30         40         50         60 
MEGREERKGG SSHFGPEERS KHLTAACTVD LTGLFKLLSK KMIITQMWHF YVTRVVLLLL 

        70         80         90        100        110        120 
ISILPGTTSQ GESRRQEPGD FVKQDIGGLS PKHAPDIPDD STDNITIFTR ILDRLLDGYD 

       130        140        150        160        170        180 
NRLRPGLGDA VTEVKTDIYV TSFGPVSDTD MEYTIDVFFR QTWHDERLKF DGPMKILPLN 

       190        200        210        220        230        240 
NLLASKIWTP DTFFHNGKKS VAHNMTTPNK LLRLVDNGTL LYTMRLTIHA ECPMHLEDFP 

       250        260        270        280        290        300 
MDVHACPLKF GSYAYTKAEV IYSWTLGKNK SVEVAQDGSR LNQYDLLGHV VGTEIIRSST 

       310        320        330        340        350        360 
GEYVVMTTHF HLKRKIGYFV IQTYLPCIMT VILSQVSFWL NRESVPARTV FGVTTVLTMT 

       370        380        390        400        410        420 
TLSISARNSL PKVAYATAMD WFIAVCYAFV FSALIEFATV NYFTKRSWAW EGKKVPEALE 

       430        440        450        460        470        480 
MKKKTPAAPT KKNTTFNIVG TTYPINLAKD TEFSTISKSA AAPSASSTPT AIASPKATYV 

       490        500        510        520        530 
QDSPAETKTY NSVSKVDKIS RIIFPVLFAI FNLVYWATYV NRESAIKGMI RKQ 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AL731695 Genomic DNA. No translation available.
BX119994 Genomic DNA. No translation available.
BX813327 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortalB1AVY2.
SMRB1AVY2. Positions 108-529.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEB1AVY2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000114554; ENSMUSP00000110201; ENSMUSG00000031343.

Organism-specific databases

MGIMGI:95615. Gabra3.

Phylogenomic databases

GeneTreeENSGT00550000074441.
HOGENOMHOG000231337.
HOVERGENHBG051707.
InParanoidB1AVY2.
OMAASPKTTY.

Gene expression databases

ArrayExpressB1AVY2.

Family and domain databases

Gene3D2.70.170.10. 1 hit.
InterProIPR006028. GABAA_rcpt.
IPR001390. GABAAa_rcpt.
IPR005433. GABBAa3_rcpt.
IPR006202. Neur_chan_lig-bd.
IPR006201. Neur_channel.
IPR006029. Neurotrans-gated_channel_TM.
IPR018000. Neurotransmitter_ion_chnl_CS.
[Graphical view]
PANTHERPTHR18945. PTHR18945. 1 hit.
PfamPF02931. Neur_chan_LBD. 1 hit.
PF02932. Neur_chan_memb. 2 hits.
[Graphical view]
PRINTSPR01079. GABAARALPHA.
PR01616. GABAARALPHA3.
PR00253. GABAARECEPTR.
PR00252. NRIONCHANNEL.
SUPFAMSSF63712. SSF63712. 1 hit.
SSF90112. SSF90112. 1 hit.
TIGRFAMsTIGR00860. LIC. 1 hit.
PROSITEPS00236. NEUROTR_ION_CHANNEL. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35546107.
SOURCESearch...

Entry information

Entry nameB1AVY2_MOUSE
AccessionPrimary (citable) accession number: B1AVY2
Entry history
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: April 16, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)