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B1AVK5

- B1AVK5_MOUSE

UniProt

B1AVK5 - B1AVK5_MOUSE

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Protein
Submitted name:

Protein Col4a6

Gene
Col4a6
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. extracellular matrix structural constituent Source: InterPro
  2. structural molecule activity Source: MGI

GO - Biological processi

  1. cellular response to amino acid stimulus Source: MGI
  2. extracellular matrix organization Source: MGI
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_196595. Anchoring fibril formation.
REACT_196606. ECM proteoglycans.
REACT_196607. Non-integrin membrane-ECM interactions.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_202342. Laminin interactions.
REACT_206066. Extracellular matrix organization.
REACT_216309. Integrin cell surface interactions.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Col4a6Imported
Gene namesi
Name:Col4a6Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome X

Organism-specific databases

MGIiMGI:2152695. Col4a6.

Subcellular locationi

GO - Cellular componenti

  1. basement membrane Source: MGI
  2. collagen type IV trimer Source: MGI
Complete GO annotation...

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotations

Proteomic databases

PaxDbiB1AVK5.
PRIDEiB1AVK5.

Expressioni

Gene expression databases

ArrayExpressiB1AVK5.

Structurei

3D structure databases

ProteinModelPortaliB1AVK5.
SMRiB1AVK5. Positions 1467-1689.

Family & Domainsi

Keywords - Domaini

CollagenSAAS annotations

Phylogenomic databases

eggNOGiNOG12793.
GeneTreeiENSGT00730000110538.
HOGENOMiHOG000085652.
HOVERGENiHBG004933.
InParanoidiB1AVK5.
KOiK06237.
OMAiATRITGD.
OrthoDBiEOG7RZ5P3.
PhylomeDBiB1AVK5.
TreeFamiTF344135.

Family and domain databases

Gene3Di2.170.240.10. 1 hit.
InterProiIPR016187. C-type_lectin_fold.
IPR008160. Collagen.
IPR001442. Collagen_VI_NC.
[Graphical view]
PfamiPF01413. C4. 2 hits.
PF01391. Collagen. 21 hits.
[Graphical view]
SMARTiSM00111. C4. 2 hits.
[Graphical view]
SUPFAMiSSF56436. SSF56436. 2 hits.
PROSITEiPS51403. NC1_IV. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1AVK5-1 [UniParc]FASTAAdd to Basket

« Hide

MHPGLWLFLV SLCLTKELAE SGQKMSYGKP CGSRDCHGVC TCFPEKGARG     50
HPGPIGTQGP AGPEGFTGPT GLSGLKGERG SPGPLGPYGS KGDKGPIGVP 100
GFVGISGIPG HPGQPGPRGP PGPDGCNGTQ GAVGFPGPDG YPGILGPPGL 150
PGHKGAKGEP VPFQGSITGI RGDPGLPGLD GIPGPSGSSG SPGDAGPIGP 200
PGLQGPPGLP GLPGPEGNMG LGFQGEKGVK GDVGLPGPAG PPPSTGELEF 250
MGFPKGKKGS KGEPGPPGFP GMSGPPGVPE FGSTGEKGEK GILGLPGPRG 300
PMGSEGIQGH PGRQGKKGTS GFPGINGFPG IKGEKGDIGV RGPDSFTDAD 350
GAVISGYPGD PGVLGLPGLR GDEGVQGQRG PSGTPGLPSL TGLPGALGPQ 400
GFPGLKGDQG NSGRTTFGEA GLPGRVGLPG LPGLPGPSGP PGRTFETGHL 450
SNIEPGFPGL QGEQGPKGHQ GLKGVKGDSG FCACEGGAPN IGPHGEPGLP 500
GIQGPIGLQG FKGTKGDPGS RGASGPAGTP GLFGPRGQTG LKGKKGEPTV 550
SRGSKMSGDK GDPGPQGTPG LAGTPGKDGR PGLPGLPGIQ GDGGSGFPGE 600
RGLPGLPGEK GHDGPIGPPG IGLPGPPGPR GLPGDKGVDG LPGQQGLRGA 650
QGVTLPCIIP GSYGPSGFPG APGFPGSKGA RGLPGIPGKP GTHGSKGGPG 700
SPGLMHLPGL PGFPGVRGEK GLPGFPGLPG KDGYPGKAGS PGLPGFKGAA 750
GDIFGAENGA SGEQGLQGLP GDKGFPGDSG LPGPKGLNGK PGMLGPKGER 800
GNPGTSGPPG QPGPSGSTDP FGIKGTSGFP GAPGLPGISG HPGKKGQRGD 850
IGQPGSTGKR GLPGIKGLPG PQGSPGFLGS PGLSGVTGLP GIEGQKGEKG 900
SSGPVGFPGL PGLPGLPGAD GLKGFSGSFG KVGQPGQTGT SGEKGDRGDP 950
GPVGISSPRP PMLNLWFKGE KGSRGSAGSD GFPGPRGDKG EPGIPGLPGP 1000
PGATGQTNTI KGLNGRPGSP GSMGRRGLPG LKGSLGIAGF PGMPGKSGSQ 1050
GLTGTSGLLG ATGIPGLKGD QGQTLGISGS PGPKGQPGEL GFKGVKGKDG 1100
LVGDRGYPGN KGDGGKVGIT GDPGFPGSPG LQGISGMNGD PGLPGSSGHL 1150
GSIGRPGPSG LIGPKGFPGA PGLHGLNGLP GTKGTHGTPG ASITGVPGPA 1200
GLPGPKGERG VPGIVIGDPG KQGSKGQKGD QGSPGLQGPA GTPGAPGISL 1250
PSVIAGQPGD PGRPGLDGER GRPGPPGPPG PPGPSSDQGD PGDSGFPGIP 1300
GLQGFKGNQG LPGFSGLSGE LGLKGMRGEP GLMGTPGKIG QPGDPGFPGM 1350
KGKAGPRGFS GPQGAPGHTP IAEAMQVPPG PLGLPGIDGI PGLIGDPGSQ 1400
GSVGLQGSKG LPGIPGKDGP SGLPGPSGIL GDPGLPGLQG PPGFEGAPGN 1450
QGPIGQPGMP GHGVRVGYTL VKHSQSEQVP LCPTGMSRLW VGYSLLFVEG 1500
QEKAHNQDLG FAGSCLPRFS TMPFIYCNIN EVCHYARRND KSYWLSTTAP 1550
IPMMPVGQTQ IPQYISRCSV CEAPSQAIAV HSQDIIVPQC PLGWHSLWIG 1600
YSFLMHTAAG AEGGGQSLVS PGSCLEDFRA TPFIECSGAR GTCHYFANKY 1650
SFWLTTVEER GQFREEPVSE TLKTGQLHTR VSRCQVCMKT P 1691
Length:1,691
Mass (Da):164,034
Last modified:April 8, 2008 - v1
Checksum:iBFBC8A730041D37A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL691493 Genomic DNA. No translation available.
AL713983 Genomic DNA. No translation available.
BX640471 Genomic DNA. No translation available.
RefSeqiNP_444415.2. NM_053185.2.
UniGeneiMm.155586.

Genome annotation databases

EnsembliENSMUST00000101205; ENSMUSP00000098765; ENSMUSG00000031273.
GeneIDi94216.
KEGGimmu:94216.
UCSCiuc012hpp.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL691493 Genomic DNA. No translation available.
AL713983 Genomic DNA. No translation available.
BX640471 Genomic DNA. No translation available.
RefSeqi NP_444415.2. NM_053185.2.
UniGenei Mm.155586.

3D structure databases

ProteinModelPortali B1AVK5.
SMRi B1AVK5. Positions 1467-1689.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PaxDbi B1AVK5.
PRIDEi B1AVK5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000101205 ; ENSMUSP00000098765 ; ENSMUSG00000031273 .
GeneIDi 94216.
KEGGi mmu:94216.
UCSCi uc012hpp.1. mouse.

Organism-specific databases

CTDi 1288.
MGIi MGI:2152695. Col4a6.

Phylogenomic databases

eggNOGi NOG12793.
GeneTreei ENSGT00730000110538.
HOGENOMi HOG000085652.
HOVERGENi HBG004933.
InParanoidi B1AVK5.
KOi K06237.
OMAi ATRITGD.
OrthoDBi EOG7RZ5P3.
PhylomeDBi B1AVK5.
TreeFami TF344135.

Enzyme and pathway databases

Reactomei REACT_196595. Anchoring fibril formation.
REACT_196606. ECM proteoglycans.
REACT_196607. Non-integrin membrane-ECM interactions.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_202342. Laminin interactions.
REACT_206066. Extracellular matrix organization.
REACT_216309. Integrin cell surface interactions.

Miscellaneous databases

NextBioi 352187.
PROi B1AVK5.
SOURCEi Search...

Gene expression databases

ArrayExpressi B1AVK5.

Family and domain databases

Gene3Di 2.170.240.10. 1 hit.
InterProi IPR016187. C-type_lectin_fold.
IPR008160. Collagen.
IPR001442. Collagen_VI_NC.
[Graphical view ]
Pfami PF01413. C4. 2 hits.
PF01391. Collagen. 21 hits.
[Graphical view ]
SMARTi SM00111. C4. 2 hits.
[Graphical view ]
SUPFAMi SSF56436. SSF56436. 2 hits.
PROSITEi PS51403. NC1_IV. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiB1AVK5_MOUSE
AccessioniPrimary (citable) accession number: B1AVK5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: September 3, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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