Protein Col4a6 - Mus musculus (Mouse)

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B1AVK5 (B1AVK5_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 45. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Protein Col4a6 Ensembl ENSMUSP00000098765

Gene names

Name:

Col4a6 Ensembl ENSMUSP00000098765 MGI 2152695

Organism

Mus musculus (Mouse) [Reference proteome] Ensembl ENSMUSP00000098765

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	1691 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSMUSP00000098765

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	cellular response to amino acid stimulus Inferred from direct assay PubMed 20548288. Source: MGI extracellular matrix organization Inferred from direct assay PubMed 10965041. Source: MGI
Cellular_component	collagen type IV Inferred from direct assay PubMed 10965041 PubMed 12101409. Source: MGI
Molecular_function	extracellular matrix structural constituent Inferred from electronic annotation. Source: InterPro structural molecule activity Inferred from direct assay PubMed 10965041. Source: MGI
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

B1AVK5 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: BFBC8A730041D37A
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FASTA

1,691

164,034

        10         20         30         40         50         60 
MHPGLWLFLV SLCLTKELAE SGQKMSYGKP CGSRDCHGVC TCFPEKGARG HPGPIGTQGP 

        70         80         90        100        110        120 
AGPEGFTGPT GLSGLKGERG SPGPLGPYGS KGDKGPIGVP GFVGISGIPG HPGQPGPRGP 

       130        140        150        160        170        180 
PGPDGCNGTQ GAVGFPGPDG YPGILGPPGL PGHKGAKGEP VPFQGSITGI RGDPGLPGLD 

       190        200        210        220        230        240 
GIPGPSGSSG SPGDAGPIGP PGLQGPPGLP GLPGPEGNMG LGFQGEKGVK GDVGLPGPAG 

       250        260        270        280        290        300 
PPPSTGELEF MGFPKGKKGS KGEPGPPGFP GMSGPPGVPE FGSTGEKGEK GILGLPGPRG 

       310        320        330        340        350        360 
PMGSEGIQGH PGRQGKKGTS GFPGINGFPG IKGEKGDIGV RGPDSFTDAD GAVISGYPGD 

       370        380        390        400        410        420 
PGVLGLPGLR GDEGVQGQRG PSGTPGLPSL TGLPGALGPQ GFPGLKGDQG NSGRTTFGEA 

       430        440        450        460        470        480 
GLPGRVGLPG LPGLPGPSGP PGRTFETGHL SNIEPGFPGL QGEQGPKGHQ GLKGVKGDSG 

       490        500        510        520        530        540 
FCACEGGAPN IGPHGEPGLP GIQGPIGLQG FKGTKGDPGS RGASGPAGTP GLFGPRGQTG 

       550        560        570        580        590        600 
LKGKKGEPTV SRGSKMSGDK GDPGPQGTPG LAGTPGKDGR PGLPGLPGIQ GDGGSGFPGE 

       610        620        630        640        650        660 
RGLPGLPGEK GHDGPIGPPG IGLPGPPGPR GLPGDKGVDG LPGQQGLRGA QGVTLPCIIP 

       670        680        690        700        710        720 
GSYGPSGFPG APGFPGSKGA RGLPGIPGKP GTHGSKGGPG SPGLMHLPGL PGFPGVRGEK 

       730        740        750        760        770        780 
GLPGFPGLPG KDGYPGKAGS PGLPGFKGAA GDIFGAENGA SGEQGLQGLP GDKGFPGDSG 

       790        800        810        820        830        840 
LPGPKGLNGK PGMLGPKGER GNPGTSGPPG QPGPSGSTDP FGIKGTSGFP GAPGLPGISG 

       850        860        870        880        890        900 
HPGKKGQRGD IGQPGSTGKR GLPGIKGLPG PQGSPGFLGS PGLSGVTGLP GIEGQKGEKG 

       910        920        930        940        950        960 
SSGPVGFPGL PGLPGLPGAD GLKGFSGSFG KVGQPGQTGT SGEKGDRGDP GPVGISSPRP 

       970        980        990       1000       1010       1020 
PMLNLWFKGE KGSRGSAGSD GFPGPRGDKG EPGIPGLPGP PGATGQTNTI KGLNGRPGSP 

      1030       1040       1050       1060       1070       1080 
GSMGRRGLPG LKGSLGIAGF PGMPGKSGSQ GLTGTSGLLG ATGIPGLKGD QGQTLGISGS 

      1090       1100       1110       1120       1130       1140 
PGPKGQPGEL GFKGVKGKDG LVGDRGYPGN KGDGGKVGIT GDPGFPGSPG LQGISGMNGD 

      1150       1160       1170       1180       1190       1200 
PGLPGSSGHL GSIGRPGPSG LIGPKGFPGA PGLHGLNGLP GTKGTHGTPG ASITGVPGPA 

      1210       1220       1230       1240       1250       1260 
GLPGPKGERG VPGIVIGDPG KQGSKGQKGD QGSPGLQGPA GTPGAPGISL PSVIAGQPGD 

      1270       1280       1290       1300       1310       1320 
PGRPGLDGER GRPGPPGPPG PPGPSSDQGD PGDSGFPGIP GLQGFKGNQG LPGFSGLSGE 

      1330       1340       1350       1360       1370       1380 
LGLKGMRGEP GLMGTPGKIG QPGDPGFPGM KGKAGPRGFS GPQGAPGHTP IAEAMQVPPG 

      1390       1400       1410       1420       1430       1440 
PLGLPGIDGI PGLIGDPGSQ GSVGLQGSKG LPGIPGKDGP SGLPGPSGIL GDPGLPGLQG 

      1450       1460       1470       1480       1490       1500 
PPGFEGAPGN QGPIGQPGMP GHGVRVGYTL VKHSQSEQVP LCPTGMSRLW VGYSLLFVEG 

      1510       1520       1530       1540       1550       1560 
QEKAHNQDLG FAGSCLPRFS TMPFIYCNIN EVCHYARRND KSYWLSTTAP IPMMPVGQTQ 

      1570       1580       1590       1600       1610       1620 
IPQYISRCSV CEAPSQAIAV HSQDIIVPQC PLGWHSLWIG YSFLMHTAAG AEGGGQSLVS 

      1630       1640       1650       1660       1670       1680 
PGSCLEDFRA TPFIECSGAR GTCHYFANKY SFWLTTVEER GQFREEPVSE TLKTGQLHTR 

      1690 
VSRCQVCMKT P

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. Ponting C.P. PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J Ensembl ENSMUSP00000098765.
[2]	Ensembl Submitted (FEB-2012) to UniProtKB Cited for: IDENTIFICATION. Strain: C57BL/6J Ensembl ENSMUSP00000098765.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AL691493 Genomic DNA. No translation available. AL713983 Genomic DNA. No translation available. BX640471 Genomic DNA. No translation available.
IPI	IPI00113475.
RefSeq	NP_444415.2. NM_053185.2.
UniGene	Mm.155586.
3D structure databases
ProteinModelPortal	B1AVK5.
SMR	B1AVK5. Positions 1467-1689.
ModBase	Search...
Proteomic databases
PaxDb	B1AVK5.
PRIDE	B1AVK5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSMUST00000101205; ENSMUSP00000098765; ENSMUSG00000031273.
GeneID	94216.
KEGG	mmu:94216.
UCSC	uc012hpp.1. mouse.
Organism-specific databases
CTD	1288.
MGI	MGI:2152695. Col4a6.
Phylogenomic databases
eggNOG	NOG12793.
GeneTree	ENSGT00700000104250.
HOGENOM	HOG000085652.
HOVERGEN	HBG004933.
InParanoid	B1AVK5.
KO	K06237.
OrthoDB	EOG4P2Q1K.
Gene expression databases
ArrayExpress	B1AVK5.
Family and domain databases
Gene3D	2.170.240.10. 1 hit.
InterPro	IPR016187. C-type_lectin_fold. IPR008160. Collagen. IPR001442. Collagen_VI_NC. [Graphical view]
Pfam	PF01413. C4. 2 hits. PF01391. Collagen. 21 hits. [Graphical view]
SMART	SM00111. C4. 2 hits. [Graphical view]
SUPFAM	SSF56436. C-type_lectin_fold. 2 hits.
PROSITE	PS51403. NC1_IV. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	352187.
SOURCE	Search...

Entry information

Entry name

B1AVK5_MOUSE

Accession

Primary (citable) accession number: B1AVK5

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	April 3, 2013
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequences

References

Cross-references

Sequence databases

3D structure databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Gene expression databases

Family and domain databases

Other

Entry information