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B1AVK5

- B1AVK5_MOUSE

UniProt

B1AVK5 - B1AVK5_MOUSE

Protein
Submitted name:

Protein Col4a6

Gene

Col4a6

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 58 (01 Oct 2014)
      Sequence version 1 (08 Apr 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. extracellular matrix structural constituent Source: InterPro
    2. structural molecule activity Source: MGI

    GO - Biological processi

    1. cellular response to amino acid stimulus Source: MGI
    2. extracellular matrix organization Source: MGI

    Enzyme and pathway databases

    ReactomeiREACT_196595. Anchoring fibril formation.
    REACT_196606. ECM proteoglycans.
    REACT_196607. Non-integrin membrane-ECM interactions.
    REACT_198984. Collagen biosynthesis and modifying enzymes.
    REACT_199046. Assembly of collagen fibrils and other multimeric structures.
    REACT_199055. Collagen degradation.
    REACT_202342. Laminin interactions.
    REACT_206066. Extracellular matrix organization.
    REACT_216309. Integrin cell surface interactions.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Col4a6Imported
    Gene namesi
    Name:Col4a6Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome X

    Organism-specific databases

    MGIiMGI:2152695. Col4a6.

    Subcellular locationi

    GO - Cellular componenti

    1. basement membrane Source: MGI
    2. collagen type IV trimer Source: MGI

    PTM / Processingi

    Keywords - PTMi

    Disulfide bondSAAS annotation

    Proteomic databases

    PaxDbiB1AVK5.
    PRIDEiB1AVK5.

    Expressioni

    Gene expression databases

    ArrayExpressiB1AVK5.

    Structurei

    3D structure databases

    ProteinModelPortaliB1AVK5.
    SMRiB1AVK5. Positions 1467-1689.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    CollagenSAAS annotation

    Phylogenomic databases

    eggNOGiNOG12793.
    GeneTreeiENSGT00730000110538.
    HOGENOMiHOG000085652.
    HOVERGENiHBG004933.
    InParanoidiB1AVK5.
    KOiK06237.
    OMAiATRITGD.
    OrthoDBiEOG7RZ5P3.
    PhylomeDBiB1AVK5.
    TreeFamiTF344135.

    Family and domain databases

    Gene3Di2.170.240.10. 1 hit.
    InterProiIPR016187. C-type_lectin_fold.
    IPR008160. Collagen.
    IPR001442. Collagen_VI_NC.
    [Graphical view]
    PfamiPF01413. C4. 2 hits.
    PF01391. Collagen. 21 hits.
    [Graphical view]
    SMARTiSM00111. C4. 2 hits.
    [Graphical view]
    SUPFAMiSSF56436. SSF56436. 2 hits.
    PROSITEiPS51403. NC1_IV. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B1AVK5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MHPGLWLFLV SLCLTKELAE SGQKMSYGKP CGSRDCHGVC TCFPEKGARG     50
    HPGPIGTQGP AGPEGFTGPT GLSGLKGERG SPGPLGPYGS KGDKGPIGVP 100
    GFVGISGIPG HPGQPGPRGP PGPDGCNGTQ GAVGFPGPDG YPGILGPPGL 150
    PGHKGAKGEP VPFQGSITGI RGDPGLPGLD GIPGPSGSSG SPGDAGPIGP 200
    PGLQGPPGLP GLPGPEGNMG LGFQGEKGVK GDVGLPGPAG PPPSTGELEF 250
    MGFPKGKKGS KGEPGPPGFP GMSGPPGVPE FGSTGEKGEK GILGLPGPRG 300
    PMGSEGIQGH PGRQGKKGTS GFPGINGFPG IKGEKGDIGV RGPDSFTDAD 350
    GAVISGYPGD PGVLGLPGLR GDEGVQGQRG PSGTPGLPSL TGLPGALGPQ 400
    GFPGLKGDQG NSGRTTFGEA GLPGRVGLPG LPGLPGPSGP PGRTFETGHL 450
    SNIEPGFPGL QGEQGPKGHQ GLKGVKGDSG FCACEGGAPN IGPHGEPGLP 500
    GIQGPIGLQG FKGTKGDPGS RGASGPAGTP GLFGPRGQTG LKGKKGEPTV 550
    SRGSKMSGDK GDPGPQGTPG LAGTPGKDGR PGLPGLPGIQ GDGGSGFPGE 600
    RGLPGLPGEK GHDGPIGPPG IGLPGPPGPR GLPGDKGVDG LPGQQGLRGA 650
    QGVTLPCIIP GSYGPSGFPG APGFPGSKGA RGLPGIPGKP GTHGSKGGPG 700
    SPGLMHLPGL PGFPGVRGEK GLPGFPGLPG KDGYPGKAGS PGLPGFKGAA 750
    GDIFGAENGA SGEQGLQGLP GDKGFPGDSG LPGPKGLNGK PGMLGPKGER 800
    GNPGTSGPPG QPGPSGSTDP FGIKGTSGFP GAPGLPGISG HPGKKGQRGD 850
    IGQPGSTGKR GLPGIKGLPG PQGSPGFLGS PGLSGVTGLP GIEGQKGEKG 900
    SSGPVGFPGL PGLPGLPGAD GLKGFSGSFG KVGQPGQTGT SGEKGDRGDP 950
    GPVGISSPRP PMLNLWFKGE KGSRGSAGSD GFPGPRGDKG EPGIPGLPGP 1000
    PGATGQTNTI KGLNGRPGSP GSMGRRGLPG LKGSLGIAGF PGMPGKSGSQ 1050
    GLTGTSGLLG ATGIPGLKGD QGQTLGISGS PGPKGQPGEL GFKGVKGKDG 1100
    LVGDRGYPGN KGDGGKVGIT GDPGFPGSPG LQGISGMNGD PGLPGSSGHL 1150
    GSIGRPGPSG LIGPKGFPGA PGLHGLNGLP GTKGTHGTPG ASITGVPGPA 1200
    GLPGPKGERG VPGIVIGDPG KQGSKGQKGD QGSPGLQGPA GTPGAPGISL 1250
    PSVIAGQPGD PGRPGLDGER GRPGPPGPPG PPGPSSDQGD PGDSGFPGIP 1300
    GLQGFKGNQG LPGFSGLSGE LGLKGMRGEP GLMGTPGKIG QPGDPGFPGM 1350
    KGKAGPRGFS GPQGAPGHTP IAEAMQVPPG PLGLPGIDGI PGLIGDPGSQ 1400
    GSVGLQGSKG LPGIPGKDGP SGLPGPSGIL GDPGLPGLQG PPGFEGAPGN 1450
    QGPIGQPGMP GHGVRVGYTL VKHSQSEQVP LCPTGMSRLW VGYSLLFVEG 1500
    QEKAHNQDLG FAGSCLPRFS TMPFIYCNIN EVCHYARRND KSYWLSTTAP 1550
    IPMMPVGQTQ IPQYISRCSV CEAPSQAIAV HSQDIIVPQC PLGWHSLWIG 1600
    YSFLMHTAAG AEGGGQSLVS PGSCLEDFRA TPFIECSGAR GTCHYFANKY 1650
    SFWLTTVEER GQFREEPVSE TLKTGQLHTR VSRCQVCMKT P 1691
    Length:1,691
    Mass (Da):164,034
    Last modified:April 8, 2008 - v1
    Checksum:iBFBC8A730041D37A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL691493 Genomic DNA. No translation available.
    AL713983 Genomic DNA. No translation available.
    BX640471 Genomic DNA. No translation available.
    RefSeqiNP_444415.2. NM_053185.2.
    UniGeneiMm.155586.

    Genome annotation databases

    EnsembliENSMUST00000101205; ENSMUSP00000098765; ENSMUSG00000031273.
    GeneIDi94216.
    KEGGimmu:94216.
    UCSCiuc012hpp.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL691493 Genomic DNA. No translation available.
    AL713983 Genomic DNA. No translation available.
    BX640471 Genomic DNA. No translation available.
    RefSeqi NP_444415.2. NM_053185.2.
    UniGenei Mm.155586.

    3D structure databases

    ProteinModelPortali B1AVK5.
    SMRi B1AVK5. Positions 1467-1689.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PaxDbi B1AVK5.
    PRIDEi B1AVK5.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000101205 ; ENSMUSP00000098765 ; ENSMUSG00000031273 .
    GeneIDi 94216.
    KEGGi mmu:94216.
    UCSCi uc012hpp.1. mouse.

    Organism-specific databases

    CTDi 1288.
    MGIi MGI:2152695. Col4a6.

    Phylogenomic databases

    eggNOGi NOG12793.
    GeneTreei ENSGT00730000110538.
    HOGENOMi HOG000085652.
    HOVERGENi HBG004933.
    InParanoidi B1AVK5.
    KOi K06237.
    OMAi ATRITGD.
    OrthoDBi EOG7RZ5P3.
    PhylomeDBi B1AVK5.
    TreeFami TF344135.

    Enzyme and pathway databases

    Reactomei REACT_196595. Anchoring fibril formation.
    REACT_196606. ECM proteoglycans.
    REACT_196607. Non-integrin membrane-ECM interactions.
    REACT_198984. Collagen biosynthesis and modifying enzymes.
    REACT_199046. Assembly of collagen fibrils and other multimeric structures.
    REACT_199055. Collagen degradation.
    REACT_202342. Laminin interactions.
    REACT_206066. Extracellular matrix organization.
    REACT_216309. Integrin cell surface interactions.

    Miscellaneous databases

    NextBioi 352187.
    PROi B1AVK5.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi B1AVK5.

    Family and domain databases

    Gene3Di 2.170.240.10. 1 hit.
    InterProi IPR016187. C-type_lectin_fold.
    IPR008160. Collagen.
    IPR001442. Collagen_VI_NC.
    [Graphical view ]
    Pfami PF01413. C4. 2 hits.
    PF01391. Collagen. 21 hits.
    [Graphical view ]
    SMARTi SM00111. C4. 2 hits.
    [Graphical view ]
    SUPFAMi SSF56436. SSF56436. 2 hits.
    PROSITEi PS51403. NC1_IV. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    2. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiB1AVK5_MOUSE
    AccessioniPrimary (citable) accession number: B1AVK5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 8, 2008
    Last sequence update: April 8, 2008
    Last modified: October 1, 2014
    This is version 58 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3