Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

B1AVK5

- B1AVK5_MOUSE

UniProt

B1AVK5 - B1AVK5_MOUSE

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

Protein Col4a6

Gene

Col4a6

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. extracellular matrix structural constituent Source: InterPro
  2. structural molecule activity Source: MGI

GO - Biological processi

  1. cellular response to amino acid stimulus Source: MGI
  2. extracellular matrix organization Source: MGI
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_196595. Anchoring fibril formation.
REACT_196606. ECM proteoglycans.
REACT_196607. Non-integrin membrane-ECM interactions.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_202342. Laminin interactions.
REACT_206066. Extracellular matrix organization.
REACT_216309. Integrin cell surface interactions.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Col4a6Imported
Gene namesi
Name:Col4a6Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome X

Organism-specific databases

MGIiMGI:2152695. Col4a6.

Subcellular locationi

GO - Cellular componenti

  1. basement membrane Source: MGI
  2. collagen type IV trimer Source: MGI
Complete GO annotation...

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotation

Proteomic databases

PaxDbiB1AVK5.
PRIDEiB1AVK5.

Expressioni

Gene expression databases

ExpressionAtlasiB1AVK5. baseline and differential.

Structurei

3D structure databases

ProteinModelPortaliB1AVK5.
SMRiB1AVK5. Positions 1467-1689.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

CollagenSAAS annotation

Phylogenomic databases

eggNOGiNOG12793.
GeneTreeiENSGT00760000118776.
HOGENOMiHOG000085652.
HOVERGENiHBG004933.
InParanoidiB1AVK5.
KOiK06237.
OMAiATRITGD.
OrthoDBiEOG7RZ5P3.
PhylomeDBiB1AVK5.
TreeFamiTF344135.

Family and domain databases

Gene3Di2.170.240.10. 1 hit.
InterProiIPR016187. C-type_lectin_fold.
IPR008160. Collagen.
IPR001442. Collagen_VI_NC.
[Graphical view]
PfamiPF01413. C4. 2 hits.
PF01391. Collagen. 21 hits.
[Graphical view]
SMARTiSM00111. C4. 2 hits.
[Graphical view]
SUPFAMiSSF56436. SSF56436. 2 hits.
PROSITEiPS51403. NC1_IV. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1AVK5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MHPGLWLFLV SLCLTKELAE SGQKMSYGKP CGSRDCHGVC TCFPEKGARG
60 70 80 90 100
HPGPIGTQGP AGPEGFTGPT GLSGLKGERG SPGPLGPYGS KGDKGPIGVP
110 120 130 140 150
GFVGISGIPG HPGQPGPRGP PGPDGCNGTQ GAVGFPGPDG YPGILGPPGL
160 170 180 190 200
PGHKGAKGEP VPFQGSITGI RGDPGLPGLD GIPGPSGSSG SPGDAGPIGP
210 220 230 240 250
PGLQGPPGLP GLPGPEGNMG LGFQGEKGVK GDVGLPGPAG PPPSTGELEF
260 270 280 290 300
MGFPKGKKGS KGEPGPPGFP GMSGPPGVPE FGSTGEKGEK GILGLPGPRG
310 320 330 340 350
PMGSEGIQGH PGRQGKKGTS GFPGINGFPG IKGEKGDIGV RGPDSFTDAD
360 370 380 390 400
GAVISGYPGD PGVLGLPGLR GDEGVQGQRG PSGTPGLPSL TGLPGALGPQ
410 420 430 440 450
GFPGLKGDQG NSGRTTFGEA GLPGRVGLPG LPGLPGPSGP PGRTFETGHL
460 470 480 490 500
SNIEPGFPGL QGEQGPKGHQ GLKGVKGDSG FCACEGGAPN IGPHGEPGLP
510 520 530 540 550
GIQGPIGLQG FKGTKGDPGS RGASGPAGTP GLFGPRGQTG LKGKKGEPTV
560 570 580 590 600
SRGSKMSGDK GDPGPQGTPG LAGTPGKDGR PGLPGLPGIQ GDGGSGFPGE
610 620 630 640 650
RGLPGLPGEK GHDGPIGPPG IGLPGPPGPR GLPGDKGVDG LPGQQGLRGA
660 670 680 690 700
QGVTLPCIIP GSYGPSGFPG APGFPGSKGA RGLPGIPGKP GTHGSKGGPG
710 720 730 740 750
SPGLMHLPGL PGFPGVRGEK GLPGFPGLPG KDGYPGKAGS PGLPGFKGAA
760 770 780 790 800
GDIFGAENGA SGEQGLQGLP GDKGFPGDSG LPGPKGLNGK PGMLGPKGER
810 820 830 840 850
GNPGTSGPPG QPGPSGSTDP FGIKGTSGFP GAPGLPGISG HPGKKGQRGD
860 870 880 890 900
IGQPGSTGKR GLPGIKGLPG PQGSPGFLGS PGLSGVTGLP GIEGQKGEKG
910 920 930 940 950
SSGPVGFPGL PGLPGLPGAD GLKGFSGSFG KVGQPGQTGT SGEKGDRGDP
960 970 980 990 1000
GPVGISSPRP PMLNLWFKGE KGSRGSAGSD GFPGPRGDKG EPGIPGLPGP
1010 1020 1030 1040 1050
PGATGQTNTI KGLNGRPGSP GSMGRRGLPG LKGSLGIAGF PGMPGKSGSQ
1060 1070 1080 1090 1100
GLTGTSGLLG ATGIPGLKGD QGQTLGISGS PGPKGQPGEL GFKGVKGKDG
1110 1120 1130 1140 1150
LVGDRGYPGN KGDGGKVGIT GDPGFPGSPG LQGISGMNGD PGLPGSSGHL
1160 1170 1180 1190 1200
GSIGRPGPSG LIGPKGFPGA PGLHGLNGLP GTKGTHGTPG ASITGVPGPA
1210 1220 1230 1240 1250
GLPGPKGERG VPGIVIGDPG KQGSKGQKGD QGSPGLQGPA GTPGAPGISL
1260 1270 1280 1290 1300
PSVIAGQPGD PGRPGLDGER GRPGPPGPPG PPGPSSDQGD PGDSGFPGIP
1310 1320 1330 1340 1350
GLQGFKGNQG LPGFSGLSGE LGLKGMRGEP GLMGTPGKIG QPGDPGFPGM
1360 1370 1380 1390 1400
KGKAGPRGFS GPQGAPGHTP IAEAMQVPPG PLGLPGIDGI PGLIGDPGSQ
1410 1420 1430 1440 1450
GSVGLQGSKG LPGIPGKDGP SGLPGPSGIL GDPGLPGLQG PPGFEGAPGN
1460 1470 1480 1490 1500
QGPIGQPGMP GHGVRVGYTL VKHSQSEQVP LCPTGMSRLW VGYSLLFVEG
1510 1520 1530 1540 1550
QEKAHNQDLG FAGSCLPRFS TMPFIYCNIN EVCHYARRND KSYWLSTTAP
1560 1570 1580 1590 1600
IPMMPVGQTQ IPQYISRCSV CEAPSQAIAV HSQDIIVPQC PLGWHSLWIG
1610 1620 1630 1640 1650
YSFLMHTAAG AEGGGQSLVS PGSCLEDFRA TPFIECSGAR GTCHYFANKY
1660 1670 1680 1690
SFWLTTVEER GQFREEPVSE TLKTGQLHTR VSRCQVCMKT P
Length:1,691
Mass (Da):164,034
Last modified:April 8, 2008 - v1
Checksum:iBFBC8A730041D37A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL691493 Genomic DNA. No translation available.
AL713983 Genomic DNA. No translation available.
BX640471 Genomic DNA. No translation available.
RefSeqiNP_444415.2. NM_053185.2.
UniGeneiMm.155586.

Genome annotation databases

EnsembliENSMUST00000101205; ENSMUSP00000098765; ENSMUSG00000031273.
GeneIDi94216.
KEGGimmu:94216.
UCSCiuc012hpp.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL691493 Genomic DNA. No translation available.
AL713983 Genomic DNA. No translation available.
BX640471 Genomic DNA. No translation available.
RefSeqi NP_444415.2. NM_053185.2.
UniGenei Mm.155586.

3D structure databases

ProteinModelPortali B1AVK5.
SMRi B1AVK5. Positions 1467-1689.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PaxDbi B1AVK5.
PRIDEi B1AVK5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000101205 ; ENSMUSP00000098765 ; ENSMUSG00000031273 .
GeneIDi 94216.
KEGGi mmu:94216.
UCSCi uc012hpp.1. mouse.

Organism-specific databases

CTDi 1288.
MGIi MGI:2152695. Col4a6.

Phylogenomic databases

eggNOGi NOG12793.
GeneTreei ENSGT00760000118776.
HOGENOMi HOG000085652.
HOVERGENi HBG004933.
InParanoidi B1AVK5.
KOi K06237.
OMAi ATRITGD.
OrthoDBi EOG7RZ5P3.
PhylomeDBi B1AVK5.
TreeFami TF344135.

Enzyme and pathway databases

Reactomei REACT_196595. Anchoring fibril formation.
REACT_196606. ECM proteoglycans.
REACT_196607. Non-integrin membrane-ECM interactions.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_202342. Laminin interactions.
REACT_206066. Extracellular matrix organization.
REACT_216309. Integrin cell surface interactions.

Miscellaneous databases

NextBioi 352187.
PROi B1AVK5.
SOURCEi Search...

Gene expression databases

ExpressionAtlasi B1AVK5. baseline and differential.

Family and domain databases

Gene3Di 2.170.240.10. 1 hit.
InterProi IPR016187. C-type_lectin_fold.
IPR008160. Collagen.
IPR001442. Collagen_VI_NC.
[Graphical view ]
Pfami PF01413. C4. 2 hits.
PF01391. Collagen. 21 hits.
[Graphical view ]
SMARTi SM00111. C4. 2 hits.
[Graphical view ]
SUPFAMi SSF56436. SSF56436. 2 hits.
PROSITEi PS51403. NC1_IV. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiB1AVK5_MOUSE
AccessioniPrimary (citable) accession number: B1AVK5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: October 29, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3