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Protein

Coronin

Gene

Coro2a

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
CoroninUniRule annotation
Gene namesi
Name:Coro2aImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 4

Organism-specific databases

MGIiMGI:1345966. Coro2a.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000030021.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini78 – 217140WD_REPEATS_REGIONInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the WD repeat coronin family.UniRule annotation
Contains 3 WD repeats.UniRule annotation

Keywords - Domaini

RepeatUniRule annotation, WD repeatUniRule annotation

Phylogenomic databases

eggNOGiKOG0303. Eukaryota.
ENOG410XQAD. LUCA.
HOVERGENiHBG059978.
KOiK13887.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR027335. CORO2A.
IPR015505. Coronin.
IPR015048. DUF1899.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PANTHERiPTHR10856. PTHR10856. 1 hit.
PTHR10856:SF2. PTHR10856:SF2. 1 hit.
PfamiPF08953. DUF1899. 1 hit.
PF00400. WD40. 2 hits.
[Graphical view]
SMARTiSM01166. DUF1899. 1 hit.
SM00320. WD40. 3 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS00678. WD_REPEATS_1. 2 hits.
PS50082. WD_REPEATS_2. 3 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1AVH4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSWHPQYRSS KFRHVYGKPA SKENCYDSVP ITRSVHDNHF CAVNPHFIAV
60 70 80 90 100
VTECAGGGAF LVIPLHQTGK LDPHYPKVCG HRGNVLDIKW NPFNDFEIAS
110 120 130 140 150
CSEDATIKIW NIPKQLLTRN LTTYRKELIG HARRVGLVEW HPTTANILFS
160 170 180 190 200
AGYDYKVMVW NLDTKDSVIA GPVKTINCHQ DVILSMSFNT NGSLLATTCK
210 220 230 240 250
DRKIRIVDPR LGIVLQEASY KGHRANKVLF LGSLKKLLST GTSRWNNRQM
260 270 280 290 300
ALWDQENLSV PLTEEDLDGS SGVLFPFFDS DTSMLYIVGK GDGNIRYYEV
310 320 330 340 350
SMEKPHLTYL TEYRSYNPQK GIGIMPKRGL DVSSCEIFRF YKLITTKSLI
360 370 380 390 400
EPVSMIVPRR SESYQEDIYP PTAAAQPSLT AHEWLSGMNR GPIMMSLRPG
410 420 430 440 450
SELLDSQTLP PERPLSNSMV QVSPQPLEPM KQPAEDGDQA PFSLLEEKLA
460 470 480 490 500
KWTAEHHLGE KSCLTNGFDV FECSPPKTEN ELLQMFYRQQ EEIRRLRELL
510 520
IQREVQTKQL ELEIKNLRMA LGQL
Length:524
Mass (Da):59,573
Last modified:April 8, 2008 - v1
Checksum:i21F73CFB3B27A5E7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL683884 Genomic DNA. No translation available.
BC138731 mRNA. Translation: AAI38732.1.
BC138732 mRNA. Translation: AAI38733.1.
RefSeqiNP_001158276.1. NM_001164804.1.
XP_011248202.1. XM_011249900.1.
XP_011248203.1. XM_011249901.1.
UniGeneiMm.416311.
Mm.485361.

Genome annotation databases

EnsembliENSMUST00000030021; ENSMUSP00000030021; ENSMUSG00000028337.
ENSMUST00000107756; ENSMUSP00000103385; ENSMUSG00000028337.
GeneIDi107684.
KEGGimmu:107684.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL683884 Genomic DNA. No translation available.
BC138731 mRNA. Translation: AAI38732.1.
BC138732 mRNA. Translation: AAI38733.1.
RefSeqiNP_001158276.1. NM_001164804.1.
XP_011248202.1. XM_011249900.1.
XP_011248203.1. XM_011249901.1.
UniGeneiMm.416311.
Mm.485361.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000030021.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000030021; ENSMUSP00000030021; ENSMUSG00000028337.
ENSMUST00000107756; ENSMUSP00000103385; ENSMUSG00000028337.
GeneIDi107684.
KEGGimmu:107684.

Organism-specific databases

CTDi7464.
MGIiMGI:1345966. Coro2a.

Phylogenomic databases

eggNOGiKOG0303. Eukaryota.
ENOG410XQAD. LUCA.
HOVERGENiHBG059978.
KOiK13887.

Miscellaneous databases

ChiTaRSiCoro2a. mouse.
SOURCEiSearch...

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR027335. CORO2A.
IPR015505. Coronin.
IPR015048. DUF1899.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PANTHERiPTHR10856. PTHR10856. 1 hit.
PTHR10856:SF2. PTHR10856:SF2. 1 hit.
PfamiPF08953. DUF1899. 1 hit.
PF00400. WD40. 2 hits.
[Graphical view]
SMARTiSM01166. DUF1899. 1 hit.
SM00320. WD40. 3 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS00678. WD_REPEATS_1. 2 hits.
PS50082. WD_REPEATS_2. 3 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: BrainImported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  3. Ensembl
    Submitted (AUG-2015) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiB1AVH4_MOUSE
AccessioniPrimary (citable) accession number: B1AVH4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: June 8, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.