B1AVA5 (B1AVA5_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Voltage-dependent L-type calcium channel subunit alpha-1F Ensembl ENSMUSP00000119207

Gene names

Name:

Cacna1f Ensembl ENSMUSP00000119207 MGI 1859639

Organism

Mus musculus (Mouse) [Reference proteome] Ensembl ENSMUSP00000119207

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	230 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

General annotation (Comments)

Subcellular location	Membrane; Multi-pass membrane protein By similarity RuleBase RU003808.
Sequence similarities	Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family. [View classification] RuleBase RU003808
Caution	The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSMUSP00000119207

Ontologies

Keywords
Biological process	Calcium transport Ion transport Transport
Cellular component	Membrane
Domain	Transmembrane RuleBase RU003378
Ligand	Calcium
Molecular function	Calcium channel RuleBase RU003808 Ion channel Voltage-gated channel RuleBase RU003808
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	axonogenesis Inferred from mutant phenotype PubMed 16155113. Source: MGI cellular calcium ion homeostasis Inferred from mutant phenotype PubMed 16155113. Source: MGI dendrite morphogenesis Inferred from mutant phenotype PubMed 16155113. Source: MGI retina development in camera-type eye Inferred from mutant phenotype PubMed 21052544. Source: MGI visual perception Inferred from mutant phenotype PubMed 16155113. Source: MGI
Cellular_component	voltage-gated calcium channel complex Inferred from electronic annotation. Source: InterPro
Molecular_function	voltage-gated calcium channel activity Inferred from mutant phenotype PubMed 16155113. Source: MGI
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	230	1	Ensembl ENSMUSP00000119207

Sequences

	Sequence		Length	Mass (Da)
	B1AVA5 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: 6479A1D759582AD7	FASTA	230	26,147
	10 20 30 40 50 60 MNGGHLGESS EDSSRISITF FRLFRVMRLV KLLSKGEGIR TLLWTFIKSF QALPYVALLI 70 80 90 100 110 120 AMIFFIYAVI GMQMFGKVAL QDGTQINRNN NFQTFPQAVL LLFRCATGEA WQEIMLASLP 130 140 150 160 170 180 GNRCDPESDF GPGEEFTCGS SFAIVYFISF FMLCAFLIIN LFVAVIMDNF DYLTRDWSIL 190 200 210 220 230 GPHHLDEFKR IWSEYDPGAK GRIKHLDVVA LLRRIQPPLG FGKLCPHRVA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P. PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J Ensembl ENSMUSP00000119207.
[2]	Ensembl Submitted (FEB-2012) to UniProtKB Cited for: IDENTIFICATION. Strain: C57BL/6J Ensembl ENSMUSP00000119207.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AL672231 Genomic DNA. No translation available.
IPI	IPI00798520.
UniGene	Mm.289647.
3D structure databases
ProteinModelPortal	B1AVA5.
SMR	B1AVA5. Positions 17-229.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSMUST00000128628; ENSMUSP00000119207; ENSMUSG00000031142.
Organism-specific databases
MGI	MGI:1859639. Cacna1f.
Phylogenomic databases
GeneTree	ENSGT00680000099892.
InParanoid	B1AVA5.
Gene expression databases
ArrayExpress	B1AVA5.
Family and domain databases
InterPro	IPR005821. Ion_trans_dom. IPR002077. VDCCAlpha1. [Graphical view]
Pfam	PF00520. Ion_trans. 1 hit. [Graphical view]
PRINTS	PR00167. CACHANNEL.
ProtoNet	Search...
Other
NextBio	35546070.
SOURCE	Search...

Entry information

Entry name

B1AVA5_MOUSE

Accession

Primary (citable) accession number: B1AVA5

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	April 3, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)