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Protein
Submitted name:

Gamma-aminobutyric acid receptor-associated protein

Gene

Gabarap

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 4 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. beta-tubulin binding Source: MGI
  2. GABA receptor binding Source: MGI
  3. microtubule binding Source: MGI

GO - Biological processi

  1. autophagic vacuole assembly Source: GO_Central
  2. extrinsic apoptotic signaling pathway via death domain receptors Source: MGI
  3. membrane fusion Source: GO_Central
  4. microtubule cytoskeleton organization Source: MGI
  5. mitochondrion degradation Source: GO_Central
  6. nucleophagy Source: GO_Central
Complete GO annotation...

Keywords - Biological processi

AutophagyUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Gamma-aminobutyric acid receptor-associated proteinImported
Gene namesi
Name:GabarapImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 11

Organism-specific databases

MGIiMGI:1861742. Gabarap.

Subcellular locationi

GO - Cellular componenti

  1. actin cytoskeleton Source: MGI
  2. autophagic vacuole Source: MGI
  3. autophagic vacuole membrane Source: MGI
  4. cytosol Source: GO_Central
  5. extrinsic component of membrane Source: GO_Central
  6. Golgi apparatus Source: MGI
  7. lysosome Source: MGI
  8. microtubule associated complex Source: MGI
  9. plasma membrane Source: MGI
  10. pre-autophagosomal structure Source: GO_Central
  11. smooth endoplasmic reticulum Source: MGI
Complete GO annotation...

PTM / Processingi

Proteomic databases

MaxQBiB1AR50.
PRIDEiB1AR50.

Expressioni

Gene expression databases

BgeeiB1AR50.
ExpressionAtlasiB1AR50. baseline and differential.

Structurei

3D structure databases

SMRiB1AR50. Positions 1-57.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATG8 family.UniRule annotation

Phylogenomic databases

GeneTreeiENSGT00390000012937.
HOGENOMiHOG000232034.
HOVERGENiHBG051706.

Family and domain databases

InterProiIPR004241. Atg8_like.
IPR029071. Ubiquitin-rel_dom.
[Graphical view]
PANTHERiPTHR10969. PTHR10969. 1 hit.
PfamiPF02991. Atg8. 1 hit.
[Graphical view]
SUPFAMiSSF54236. SSF54236. 1 hit.

Sequencei

Sequence statusi: Complete.

B1AR50-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKFVYKEEHP FEKRRSEGEK IRKKYPDRVP VIVEKAPKAR IGDLDKKKYL
60 70 80 90 100
VPSDLTVPRW VSCTRNTMKK TSFYTLPTVM KASMVCEAAV PEVGGSILRR

EVALLP
Length:106
Mass (Da):12,195
Last modified:April 8, 2008 - v1
Checksum:iFA086579F62CE185
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL596185 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000108592; ENSMUSP00000104233; ENSMUSG00000018567.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL596185 Genomic DNA. No translation available.

3D structure databases

SMRiB1AR50. Positions 1-57.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiB1AR50.
PRIDEiB1AR50.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000108592; ENSMUSP00000104233; ENSMUSG00000018567.

Organism-specific databases

MGIiMGI:1861742. Gabarap.

Phylogenomic databases

GeneTreeiENSGT00390000012937.
HOGENOMiHOG000232034.
HOVERGENiHBG051706.

Miscellaneous databases

ChiTaRSiGabarap. mouse.
NextBioi35545695.
SOURCEiSearch...

Gene expression databases

BgeeiB1AR50.
ExpressionAtlasiB1AR50. baseline and differential.

Family and domain databases

InterProiIPR004241. Atg8_like.
IPR029071. Ubiquitin-rel_dom.
[Graphical view]
PANTHERiPTHR10969. PTHR10969. 1 hit.
PfamiPF02991. Atg8. 1 hit.
[Graphical view]
SUPFAMiSSF54236. SSF54236. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (JUN-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiB1AR50_MOUSE
AccessioniPrimary (citable) accession number: B1AR50
Entry historyi
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: April 1, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.