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Protein

Putative protein FAM220BP

Gene

FAM220BP

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Names & Taxonomyi

Protein namesi
Recommended name:
Putative protein FAM220BP
Alternative name(s):
Protein FAM220B pseudogene
Gene namesi
Name:FAM220BP
Synonyms:C9orf51
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Unplaced

Organism-specific databases

HGNCiHGNC:23678. FAM220BP.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 271271Putative protein FAM220BPPRO_0000344620Add
BLAST

Proteomic databases

PaxDbiB1ANY3.
PRIDEiB1ANY3.

Structurei

3D structure databases

ProteinModelPortaliB1ANY3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG298962.
HOGENOMiHOG000111641.
HOVERGENiHBG106751.
InParanoidiB1ANY3.
PhylomeDBiB1ANY3.

Family and domain databases

InterProiIPR029155. SIPAR.
[Graphical view]
PfamiPF15487. FAM220. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B1ANY3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRDRRGPLGT CLAQVQWAGG GDSDKLSYSL KKRMPTEGPW PADAPSWMNK
60 70 80 90 100
PAVDGNSQSE ALSLEMAGLS LPSGGPVLPY VKESARRNPA SAATPSAAVG
110 120 130 140 150
LFPAPTEYFA RVSCSGVEAL GRDWLGGGPR ATHGHRGQCP KGEPRVSRLT
160 170 180 190 200
RHQKLPEMGS FWDDPPSAFP SGLGSELEPS CLHSILSATL HACPEVLLKD
210 220 230 240 250
ETKRIFLDLL NPMFSKQTIE FKKMFKSTSD GLQITLGLLA LQHFELANSL
260 270
CHSLKYKQNN ASRLILRVVL E
Length:271
Mass (Da):29,405
Last modified:April 8, 2008 - v1
Checksum:i60B92EE548539102
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti162 – 1621W → R.
Corresponds to variant rs1832322 [ dbSNP | Ensembl ].
VAR_050820
Natural varianti199 – 1991K → N.
Corresponds to variant rs1832323 [ dbSNP | Ensembl ].
VAR_050821
Natural varianti203 – 2031K → N.
Corresponds to variant rs12336220 [ dbSNP | Ensembl ].
VAR_050822

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL390726 Genomic DNA. Translation: CAH73296.1.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL390726 Genomic DNA. Translation: CAH73296.1.

3D structure databases

ProteinModelPortaliB1ANY3.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiB1ANY3.
PRIDEiB1ANY3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

GeneCardsiGC09P038527.
HGNCiHGNC:23678. FAM220BP.
neXtProtiNX_B1ANY3.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG298962.
HOGENOMiHOG000111641.
HOVERGENiHBG106751.
InParanoidiB1ANY3.
PhylomeDBiB1ANY3.

Family and domain databases

InterProiIPR029155. SIPAR.
[Graphical view]
PfamiPF15487. FAM220. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "DNA sequence and analysis of human chromosome 9."
    Humphray S.J., Oliver K., Hunt A.R., Plumb R.W., Loveland J.E., Howe K.L., Andrews T.D., Searle S., Hunt S.E., Scott C.E., Jones M.C., Ainscough R., Almeida J.P., Ambrose K.D., Ashwell R.I.S., Babbage A.K., Babbage S., Bagguley C.L.
    , Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beasley H., Beasley O., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burford D., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Chen Y., Clarke G., Clark S.Y., Clee C.M., Clegg S., Collier R.E., Corby N., Crosier M., Cummings A.T., Davies J., Dhami P., Dunn M., Dutta I., Dyer L.W., Earthrowl M.E., Faulkner L., Fleming C.J., Frankish A., Frankland J.A., French L., Fricker D.G., Garner P., Garnett J., Ghori J., Gilbert J.G.R., Glison C., Grafham D.V., Gribble S., Griffiths C., Griffiths-Jones S., Grocock R., Guy J., Hall R.E., Hammond S., Harley J.L., Harrison E.S.I., Hart E.A., Heath P.D., Henderson C.D., Hopkins B.L., Howard P.J., Howden P.J., Huckle E., Johnson C., Johnson D., Joy A.A., Kay M., Keenan S., Kershaw J.K., Kimberley A.M., King A., Knights A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C., Lloyd D.M., Lovell J., Martin S., Mashreghi-Mohammadi M., Matthews L., McLaren S., McLay K.E., McMurray A., Milne S., Nickerson T., Nisbett J., Nordsiek G., Pearce A.V., Peck A.I., Porter K.M., Pandian R., Pelan S., Phillimore B., Povey S., Ramsey Y., Rand V., Scharfe M., Sehra H.K., Shownkeen R., Sims S.K., Skuce C.D., Smith M., Steward C.A., Swarbreck D., Sycamore N., Tester J., Thorpe A., Tracey A., Tromans A., Thomas D.W., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Williams S.A., Wilming L., Wray P.W., Young L., Ashurst J.L., Coulson A., Blocker H., Durbin R.M., Sulston J.E., Hubbard T., Jackson M.J., Bentley D.R., Beck S., Rogers J., Dunham I.
    Nature 429:369-374(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiF220P_HUMAN
AccessioniPrimary (citable) accession number: B1ANY3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 22, 2008
Last sequence update: April 8, 2008
Last modified: June 24, 2015
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 9
    Human chromosome 9: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.