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Protein
Submitted name:

Sodium/potassium/calcium exchanger 5

Gene

slc24a5

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

  • melanocyte differentiation Source: ZFIN
  • melanocyte migration Source: ZFIN
  • regulation of melanin biosynthetic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-DRE-425561. Sodium/Calcium exchangers.

Names & Taxonomyi

Protein namesi
Submitted name:
Sodium/potassium/calcium exchanger 5Imported
Gene namesi
Name:slc24a5Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437 Componenti: Chromosome 18

Organism-specific databases

ZFINiZDB-GENE-031210-1. slc24a5.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei81 – 9919HelicalSequence analysisAdd
BLAST
Transmembranei120 – 14324HelicalSequence analysisAdd
BLAST
Transmembranei149 – 17224HelicalSequence analysisAdd
BLAST
Transmembranei184 – 20219HelicalSequence analysisAdd
BLAST
Transmembranei208 – 23023HelicalSequence analysisAdd
BLAST
Transmembranei346 – 37025HelicalSequence analysisAdd
BLAST
Transmembranei382 – 40423HelicalSequence analysisAdd
BLAST
Transmembranei416 – 43722HelicalSequence analysisAdd
BLAST
Transmembranei449 – 46820HelicalSequence analysisAdd
BLAST
Transmembranei480 – 49819HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiB0V3S7.

Expressioni

Gene expression databases

BgeeiB0V3S7.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000111901.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini86 – 226141Na_Ca_exInterPro annotationAdd
BLAST
Domaini346 – 496151Na_Ca_exInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiENOG410Y9YY. LUCA.
KOG1307. Eukaryota.
GeneTreeiENSGT00760000119209.
HOVERGENiHBG054881.
OMAiTTQCVIS.
OrthoDBiEOG776SP8.

Family and domain databases

InterProiIPR004481. K/Na/Ca-exchanger.
IPR004837. NaCa_Exmemb.
IPR030245. SLC24A5.
[Graphical view]
PANTHERiPTHR10846. PTHR10846. 1 hit.
PTHR10846:SF27. PTHR10846:SF27. 1 hit.
PfamiPF01699. Na_Ca_ex. 2 hits.
[Graphical view]
TIGRFAMsiTIGR00367. TIGR00367. 1 hit.

Sequencei

Sequence statusi: Complete.

B0V3S7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRTDVFLQRR KRRDVLLSII ALLLLIFAIV HLVFCAGLSF QGSSSARVRR
60 70 80 90 100
DLENASECVQ PQSSEFPEGF FTVQERKDGG ILIYFMIIFY MLLSVSIVCD
110 120 130 140 150
EYFLPSLEVI SERLGLSQDV AGATFMAAGS SAPELVTAFL GVFVTKGDIG
160 170 180 190 200
VSTIMGSAVY NLLCICAACG LLSSAVGRLS CWPLFRDCVA YSISVAAVIA
210 220 230 240 250
IISDNRVYWY DGACLLLVYG VYVAVLCFDL KISEYVMQRF SPCCWCLKPR
260 270 280 290 300
DRDSGEQQPL VGWSDDSSLR VQRRSRNDSG IFQDDSGYSH LSLSLHGLNE
310 320 330 340 350
ISDEHKSVFS MPDHDLKRIL WVLSLPVSTL LFVSVPDCRR PFWKNFYMLT
360 370 380 390 400
FLMSAVWISA FTYVLVWMVT IVGETLGIPD TVMGMTLLAA GTSIPDTVAS
410 420 430 440 450
VMVAREGKSD MAMSNIVGSN VFDMLCLGLP WFIQTVFVDV GSPVDVNSSG
460 470 480 490 500
LVFMSCTLLL SIIFLFLAVH INGWKLDWKL GLVCLACYIL FATLSILYEL
510
GIIGNNPIRS CSD
Length:513
Mass (Da):56,756
Last modified:April 8, 2008 - v1
Checksum:i364F65699D86FBCD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU457753 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSDART00000033574; ENSDARP00000030499; ENSDARG00000024771.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU457753 Genomic DNA. No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000111901.

Proteomic databases

PaxDbiB0V3S7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000033574; ENSDARP00000030499; ENSDARG00000024771.

Organism-specific databases

ZFINiZDB-GENE-031210-1. slc24a5.

Phylogenomic databases

eggNOGiENOG410Y9YY. LUCA.
KOG1307. Eukaryota.
GeneTreeiENSGT00760000119209.
HOVERGENiHBG054881.
OMAiTTQCVIS.
OrthoDBiEOG776SP8.

Enzyme and pathway databases

ReactomeiR-DRE-425561. Sodium/Calcium exchangers.

Gene expression databases

BgeeiB0V3S7.

Family and domain databases

InterProiIPR004481. K/Na/Ca-exchanger.
IPR004837. NaCa_Exmemb.
IPR030245. SLC24A5.
[Graphical view]
PANTHERiPTHR10846. PTHR10846. 1 hit.
PTHR10846:SF27. PTHR10846:SF27. 1 hit.
PfamiPF01699. Na_Ca_ex. 2 hits.
[Graphical view]
TIGRFAMsiTIGR00367. TIGR00367. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.
  2. Ensembl
    Submitted (AUG-2013) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.

Entry informationi

Entry nameiB0V3S7_DANRE
AccessioniPrimary (citable) accession number: B0V3S7
Entry historyi
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: December 9, 2015
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.