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B0V1P2

- B0V1P2_DANRE

UniProt

B0V1P2 - B0V1P2_DANRE

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Protein
Submitted name:

Uncharacterized protein

Gene
zgc:163121
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein inferred from homologyi

Functioni

Cofactori

Pyridoxal phosphate By similarity.UniRule annotation

GO - Molecular functioni

  1. carboxy-lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:zgc:163121Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437: Chromosome 2

Organism-specific databases

ZFINiZDB-GENE-070424-80. zgc:163121.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000103502.

Structurei

3D structure databases

ProteinModelPortaliB0V1P2.
SMRiB0V1P2. Positions 46-543.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

GeneTreeiENSGT00730000110441.
HOGENOMiHOG000005382.
HOVERGENiHBG004980.
KOiK01580.
OMAiVAPRIKG.
OrthoDBiEOG7H1JM3.
PhylomeDBiB0V1P2.
TreeFamiTF314688.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
IPR021115. Pyridoxal-P_BS.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
PROSITEiPS00392. DDC_GAD_HDC_YDC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B0V1P2-1 [UniParc]FASTAAdd to Basket

« Hide

MTRSPESIMD FTQADRRHLD KSKQDTSSLE NTDDGLKYDS GRVTHDFSCI    50
HSKDLLPAED GEEATKHFLQ ELVNILLAYI SKSLKRSTKV LDFHYPHQLN 100
EGLEGFSLEL PDQPDNLEQL LVDCRDTLKY GVKTGHPRFF NQLSTGLDIV 150
GLAGEWLTST ANTNMFTYEI SPVFILMEEV VLRKMHTIIG WPEEDGDGIF 200
CPGGSMSNLY SVLLARFHLF PAVKTHGMCA IPRLAMFTSA HSHYSIKKSA 250
AVLGIGTENV IVVRCDERGK MISSELNSSI EEAKSKGLVP FYVNATAGTT 300
VYGAFDPLHK IADICEHHGL WMHVDAAWGG GLLLSNKHRV KLHGIERAHS 350
VTWNPHKMMG VPLQCSTILV KRKGLLQQCN QLCAEYLFQP DKHYEVSYDT 400
GDKSIQCGRH VDIFKLWLMW KAKGSEGFES QVNHCLENAE YLYYKLKRRT 450
DFQLVFKGKP EHSNVCFWYL PKRVQNIPLG PEREKELHMV APKIKTKMME 500
EGFTMIGYQP LEDKVNFFRC VFSNPATQRE DVDFLLDEIV RLGCEL 546
Length:546
Mass (Da):62,070
Last modified:April 8, 2008 - v1
Checksum:i7258EFCC8CDD28B2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CR925777 Genomic DNA. No translation available.
CU693487 Genomic DNA. No translation available.
RefSeqiNP_001083039.2. NM_001089570.2.
UniGeneiDr.91046.

Genome annotation databases

EnsembliENSDART00000109561; ENSDARP00000103502; ENSDARG00000055370.
GeneIDi100038790.
KEGGidre:100038790.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CR925777 Genomic DNA. No translation available.
CU693487 Genomic DNA. No translation available.
RefSeqi NP_001083039.2. NM_001089570.2.
UniGenei Dr.91046.

3D structure databases

ProteinModelPortali B0V1P2.
SMRi B0V1P2. Positions 46-543.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 7955.ENSDARP00000103502.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSDART00000109561 ; ENSDARP00000103502 ; ENSDARG00000055370 .
GeneIDi 100038790.
KEGGi dre:100038790.

Organism-specific databases

ZFINi ZDB-GENE-070424-80. zgc:163121.

Phylogenomic databases

GeneTreei ENSGT00730000110441.
HOGENOMi HOG000005382.
HOVERGENi HBG004980.
KOi K01580.
OMAi VAPRIKG.
OrthoDBi EOG7H1JM3.
PhylomeDBi B0V1P2.
TreeFami TF314688.

Miscellaneous databases

NextBioi 20788577.

Family and domain databases

Gene3Di 3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProi IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
IPR021115. Pyridoxal-P_BS.
[Graphical view ]
Pfami PF00282. Pyridoxal_deC. 1 hit.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 1 hit.
PROSITEi PS00392. DDC_GAD_HDC_YDC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.
  2. Ensembl
    Submitted (AUG-2013) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.

Entry informationi

Entry nameiB0V1P2_DANRE
AccessioniPrimary (citable) accession number: B0V1P2
Entry historyi
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: July 9, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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