Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

B0V1P2

- B0V1P2_DANRE

UniProt

B0V1P2 - B0V1P2_DANRE

Protein
Submitted name:

Uncharacterized protein

Gene

zgc:163121

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 47 (01 Oct 2014)
      Sequence version 1 (08 Apr 2008)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Cofactori

    Pyridoxal phosphate.UniRule annotation

    GO - Molecular functioni

    1. carboxy-lyase activity Source: InterPro
    2. pyridoxal phosphate binding Source: InterPro

    GO - Biological processi

    1. carboxylic acid metabolic process Source: InterPro

    Keywords - Molecular functioni

    LyaseUniRule annotation

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    ORF Names:zgc:163121Imported
    OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
    Taxonomic identifieri7955 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
    ProteomesiUP000000437: Chromosome 2

    Organism-specific databases

    ZFINiZDB-GENE-070424-80. zgc:163121.

    Interactioni

    Protein-protein interaction databases

    STRINGi7955.ENSDARP00000103502.

    Structurei

    3D structure databases

    ProteinModelPortaliB0V1P2.
    SMRiB0V1P2. Positions 46-543.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the group II decarboxylase family.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00730000110441.
    HOGENOMiHOG000005382.
    HOVERGENiHBG004980.
    KOiK01580.
    OMAiVAPRIKG.
    OrthoDBiEOG7H1JM3.
    PhylomeDBiB0V1P2.
    TreeFamiTF314688.

    Family and domain databases

    Gene3Di3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProiIPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    IPR021115. Pyridoxal-P_BS.
    [Graphical view]
    PfamiPF00282. Pyridoxal_deC. 1 hit.
    [Graphical view]
    SUPFAMiSSF53383. SSF53383. 1 hit.
    PROSITEiPS00392. DDC_GAD_HDC_YDC. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B0V1P2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTRSPESIMD FTQADRRHLD KSKQDTSSLE NTDDGLKYDS GRVTHDFSCI    50
    HSKDLLPAED GEEATKHFLQ ELVNILLAYI SKSLKRSTKV LDFHYPHQLN 100
    EGLEGFSLEL PDQPDNLEQL LVDCRDTLKY GVKTGHPRFF NQLSTGLDIV 150
    GLAGEWLTST ANTNMFTYEI SPVFILMEEV VLRKMHTIIG WPEEDGDGIF 200
    CPGGSMSNLY SVLLARFHLF PAVKTHGMCA IPRLAMFTSA HSHYSIKKSA 250
    AVLGIGTENV IVVRCDERGK MISSELNSSI EEAKSKGLVP FYVNATAGTT 300
    VYGAFDPLHK IADICEHHGL WMHVDAAWGG GLLLSNKHRV KLHGIERAHS 350
    VTWNPHKMMG VPLQCSTILV KRKGLLQQCN QLCAEYLFQP DKHYEVSYDT 400
    GDKSIQCGRH VDIFKLWLMW KAKGSEGFES QVNHCLENAE YLYYKLKRRT 450
    DFQLVFKGKP EHSNVCFWYL PKRVQNIPLG PEREKELHMV APKIKTKMME 500
    EGFTMIGYQP LEDKVNFFRC VFSNPATQRE DVDFLLDEIV RLGCEL 546
    Length:546
    Mass (Da):62,070
    Last modified:April 8, 2008 - v1
    Checksum:i7258EFCC8CDD28B2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CR925777 Genomic DNA. No translation available.
    CU693487 Genomic DNA. No translation available.
    RefSeqiNP_001083039.2. NM_001089570.2.
    UniGeneiDr.91046.

    Genome annotation databases

    EnsembliENSDART00000109561; ENSDARP00000103502; ENSDARG00000055370.
    GeneIDi100038790.
    KEGGidre:100038790.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CR925777 Genomic DNA. No translation available.
    CU693487 Genomic DNA. No translation available.
    RefSeqi NP_001083039.2. NM_001089570.2.
    UniGenei Dr.91046.

    3D structure databases

    ProteinModelPortali B0V1P2.
    SMRi B0V1P2. Positions 46-543.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 7955.ENSDARP00000103502.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSDART00000109561 ; ENSDARP00000103502 ; ENSDARG00000055370 .
    GeneIDi 100038790.
    KEGGi dre:100038790.

    Organism-specific databases

    ZFINi ZDB-GENE-070424-80. zgc:163121.

    Phylogenomic databases

    GeneTreei ENSGT00730000110441.
    HOGENOMi HOG000005382.
    HOVERGENi HBG004980.
    KOi K01580.
    OMAi VAPRIKG.
    OrthoDBi EOG7H1JM3.
    PhylomeDBi B0V1P2.
    TreeFami TF314688.

    Miscellaneous databases

    NextBioi 20788577.

    Family and domain databases

    Gene3Di 3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProi IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    IPR021115. Pyridoxal-P_BS.
    [Graphical view ]
    Pfami PF00282. Pyridoxal_deC. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53383. SSF53383. 1 hit.
    PROSITEi PS00392. DDC_GAD_HDC_YDC. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The zebrafish reference genome sequence and its relationship to the human genome."
      Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
      , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
      Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: TuebingenImported.
    2. Ensembl
      Submitted (AUG-2013) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: TuebingenImported.

    Entry informationi

    Entry nameiB0V1P2_DANRE
    AccessioniPrimary (citable) accession number: B0V1P2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 8, 2008
    Last sequence update: April 8, 2008
    Last modified: October 1, 2014
    This is version 47 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3