B0U5E6 (RIMK_XYLFM) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ribosomal protein S6 modification protein

Gene names

Name:	rimK
Ordered Locus Names:	Xfasm12_2103

Organism

Xylella fastidiosa (strain M12) [Complete proteome] [HAMAP]

Taxonomic identifier

405440 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xylella › Xylella fastidiosa

Protein attributes

Sequence length	301 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6 By similarity. HAMAP-Rule MF_01552
Cofactor	Binds 2 magnesium or manganese ions per subunit By similarity.
Sequence similarities	Belongs to the RimK family. Contains 1 ATP-grasp domain.

Ontologies

Keywords
Biological process	Protein biosynthesis
Ligand	ATP-binding Magnesium Manganese Metal-binding Nucleotide-binding
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	cellular protein modification process Inferred from electronic annotation. Source: InterPro translation Inferred from electronic annotation. Source: HAMAP
Molecular_function	ATP binding Inferred from electronic annotation. Source: HAMAP magnesium ion binding Inferred from electronic annotation. Source: HAMAP manganese ion binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 301	301	Ribosomal protein S6 modification protein HAMAP-Rule MF_01552		PRO_1000146955
Regions
	Domain	104 – 287	184	ATP-grasp
	Nucleotide binding	177 – 187	11	ATP By similarity
Sites
	Metal binding	248	1	Magnesium or manganese 1 By similarity
	Metal binding	260	1	Magnesium or manganese 1 By similarity
	Metal binding	260	1	Magnesium or manganese 2 By similarity
	Metal binding	262	1	Magnesium or manganese 2 By similarity
	Binding site	141	1	ATP By similarity
	Binding site	203	1	ATP By similarity

Sequences

	Sequence		Length	Mass (Da)
	B0U5E6 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: 902ECC728AA0C77F	FASTA	301	32,678
	10 20 30 40 50 60 MKLAILSRNS KLYSTRRLVE VARMRGHTVR ILDPLRCYMR IVVGDFSMHY KGKPIDGYHA 70 80 90 100 110 120 VIPRIGVSVT HYATAVLRQF ELMGTYSPNP SDAILRSRDK LRAHQLLAAQ GIDMPMTVFG 130 140 150 160 170 180 DNPDDTQDLL SMLGPPPHVV KLNEGAQGKG VILSEKNSAS RGLVEALRGL YANFLVQEFI 190 200 210 220 230 240 SEADSADLRC FVVGNQVVAT MRRQAADGDF RSNLHLGGSA TAATASEEEQ EVAVRSAHAL 250 260 270 280 290 300 GLTVAGVDLI RSRRGPLVLE VNPTPGLEGI EATSGTNVAI KIVHHVEEML ATICSSNICQ P

References

[1]

"Whole genome sequences of two Xylella fastidiosa strains (M12 and M23) causing almond leaf scorch disease in California." Chen J., Xie G., Han S., Chertkov O., Sims D., Civerolo E.L. J. Bacteriol. 192:4534-4534(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: M12.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000941 Genomic DNA. Translation: ACA12964.1.
RefSeq	YP_001776594.1. NC_010513.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	405440.Xfasm12_2103.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACA12964; ACA12964; Xfasm12_2103.
GeneID	6120308.
KEGG	xfm:Xfasm12_2103.
PATRIC	24141059. VBIXylFas124301_2467.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0189.
HOGENOM	HOG000293092.
KO	K05844.
OMA	CREPRLY.
ProtClustDB	CLSK451700.
Enzyme and pathway databases
BioCyc	XFAS405440:GH0D-2145-MONOMER.
Family and domain databases
Gene3D	3.30.470.20. 1 hit. 3.40.50.20. 1 hit.
HAMAP	MF_01552. RimK.
InterPro	IPR011761. ATP-grasp. IPR013651. ATP-grasp_RimK-type. IPR013816. ATP_grasp_subdomain_2. IPR016185. PreATP-grasp_dom. IPR023533. Ribosomal_S6_modifier_RimK. IPR004666. RpS6_RimK/Lys_biosynth_LsyX. [Graphical view]
Pfam	PF08443. RimK. 1 hit. [Graphical view]
TIGRFAMs	TIGR00768. rimK_fam. 1 hit.
PROSITE	PS50975. ATP_GRASP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RIMK_XYLFM

Accession

Primary (citable) accession number: B0U5E6

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 14, 2009
Last sequence update:	April 8, 2008
Last modified:	May 29, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program