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B0U5E6 (RIMK_XYLFM) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable alpha-L-glutamate ligase

EC=6.3.2.-
Gene names
Name:rimK
Ordered Locus Names:Xfasm12_2103
OrganismXylella fastidiosa (strain M12) [Complete proteome] [HAMAP]
Taxonomic identifier405440 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXylella

Protein attributes

Sequence length301 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity.

Sequence similarities

Belongs to the RimK family.

Contains 1 ATP-grasp domain.

Ontologies

Keywords
   Biological processProtein biosynthesis
   LigandATP-binding
Magnesium
Manganese
Metal-binding
Nucleotide-binding
   Molecular functionLigase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcellular protein modification process

Inferred from electronic annotation. Source: InterPro

translation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

magnesium ion binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

manganese ion binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 301301Probable alpha-L-glutamate ligase HAMAP-Rule MF_01552
PRO_1000146955

Regions

Domain104 – 287184ATP-grasp
Nucleotide binding178 – 1792ATP By similarity
Nucleotide binding211 – 2133ATP By similarity

Sites

Metal binding2481Magnesium or manganese 1 By similarity
Metal binding2601Magnesium or manganese 1 By similarity
Metal binding2601Magnesium or manganese 2 By similarity
Metal binding2621Magnesium or manganese 2 By similarity
Binding site1411ATP By similarity
Binding site1871ATP By similarity

Sequences

Sequence LengthMass (Da)Tools
B0U5E6 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: 902ECC728AA0C77F

FASTA30132,678
        10         20         30         40         50         60 
MKLAILSRNS KLYSTRRLVE VARMRGHTVR ILDPLRCYMR IVVGDFSMHY KGKPIDGYHA 

        70         80         90        100        110        120 
VIPRIGVSVT HYATAVLRQF ELMGTYSPNP SDAILRSRDK LRAHQLLAAQ GIDMPMTVFG 

       130        140        150        160        170        180 
DNPDDTQDLL SMLGPPPHVV KLNEGAQGKG VILSEKNSAS RGLVEALRGL YANFLVQEFI 

       190        200        210        220        230        240 
SEADSADLRC FVVGNQVVAT MRRQAADGDF RSNLHLGGSA TAATASEEEQ EVAVRSAHAL 

       250        260        270        280        290        300 
GLTVAGVDLI RSRRGPLVLE VNPTPGLEGI EATSGTNVAI KIVHHVEEML ATICSSNICQ 


P 

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References

[1]"Whole genome sequences of two Xylella fastidiosa strains (M12 and M23) causing almond leaf scorch disease in California."
Chen J., Xie G., Han S., Chertkov O., Sims D., Civerolo E.L.
J. Bacteriol. 192:4534-4534(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: M12.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000941 Genomic DNA. Translation: ACA12964.1.
RefSeqYP_001776594.1. NC_010513.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING405440.Xfasm12_2103.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACA12964; ACA12964; Xfasm12_2103.
GeneID6120308.
KEGGxfm:Xfasm12_2103.
PATRIC24141059. VBIXylFas124301_2467.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0189.
HOGENOMHOG000293092.
KOK05844.
OMACREPRLY.
OrthoDBEOG6DZDX8.
ProtClustDBCLSK451700.

Enzyme and pathway databases

BioCycXFAS405440:GH0D-2145-MONOMER.

Family and domain databases

Gene3D3.30.470.20. 1 hit.
3.40.50.20. 1 hit.
HAMAPMF_01552. RimK.
InterProIPR011761. ATP-grasp.
IPR013651. ATP-grasp_RimK-type.
IPR013816. ATP_grasp_subdomain_2.
IPR016185. PreATP-grasp_dom.
IPR023533. Ribosomal_S6_modifier_RimK.
IPR004666. RpS6_RimK/Lys_biosynth_LsyX.
[Graphical view]
PfamPF08443. RimK. 1 hit.
[Graphical view]
TIGRFAMsTIGR00768. rimK_fam. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRIMK_XYLFM
AccessionPrimary (citable) accession number: B0U5E6
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: April 8, 2008
Last modified: March 19, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families