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B0U5E6

- RIMK_XYLFM

UniProt

B0U5E6 - RIMK_XYLFM

Protein

Probable alpha-L-glutamate ligase

Gene

rimK

Organism
Xylella fastidiosa (strain M12)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 48 (01 Oct 2014)
      Sequence version 1 (08 Apr 2008)
      Previous versions | rss
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    Functioni

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei141 – 1411ATPUniRule annotation
    Binding sitei187 – 1871ATPUniRule annotation
    Metal bindingi248 – 2481Magnesium or manganese 1UniRule annotation
    Metal bindingi260 – 2601Magnesium or manganese 1UniRule annotation
    Metal bindingi260 – 2601Magnesium or manganese 2UniRule annotation
    Metal bindingi262 – 2621Magnesium or manganese 2UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi178 – 1792ATPUniRule annotation
    Nucleotide bindingi211 – 2133ATPUniRule annotation

    GO - Molecular functioni

    1. acid-amino acid ligase activity Source: UniProtKB-HAMAP
    2. ATP binding Source: UniProtKB-HAMAP
    3. magnesium ion binding Source: UniProtKB-HAMAP
    4. manganese ion binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. cellular protein modification process Source: InterPro
    2. translation Source: UniProtKB-KW

    Keywords - Molecular functioni

    Ligase

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    ATP-binding, Magnesium, Manganese, Metal-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciXFAS405440:GH0D-2145-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable alpha-L-glutamate ligaseUniRule annotation (EC:6.3.2.-UniRule annotation)
    Gene namesi
    Name:rimKUniRule annotation
    Ordered Locus Names:Xfasm12_2103
    OrganismiXylella fastidiosa (strain M12)
    Taxonomic identifieri405440 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXylella
    ProteomesiUP000008539: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 301301Probable alpha-L-glutamate ligasePRO_1000146955Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi405440.Xfasm12_2103.

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini104 – 287184ATP-graspUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the RimK family.UniRule annotation
    Contains 1 ATP-grasp domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0189.
    HOGENOMiHOG000293092.
    KOiK05844.
    OMAiCREPRLY.
    OrthoDBiEOG6DZDX8.

    Family and domain databases

    Gene3Di3.30.470.20. 1 hit.
    3.40.50.20. 1 hit.
    HAMAPiMF_01552. RimK.
    InterProiIPR011761. ATP-grasp.
    IPR013651. ATP-grasp_RimK-type.
    IPR013816. ATP_grasp_subdomain_2.
    IPR016185. PreATP-grasp_dom.
    IPR023533. Ribosomal_S6_modifier_RimK.
    IPR004666. RpS6_RimK/Lys_biosynth_LsyX.
    [Graphical view]
    PfamiPF08443. RimK. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00768. rimK_fam. 1 hit.
    PROSITEiPS50975. ATP_GRASP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B0U5E6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKLAILSRNS KLYSTRRLVE VARMRGHTVR ILDPLRCYMR IVVGDFSMHY    50
    KGKPIDGYHA VIPRIGVSVT HYATAVLRQF ELMGTYSPNP SDAILRSRDK 100
    LRAHQLLAAQ GIDMPMTVFG DNPDDTQDLL SMLGPPPHVV KLNEGAQGKG 150
    VILSEKNSAS RGLVEALRGL YANFLVQEFI SEADSADLRC FVVGNQVVAT 200
    MRRQAADGDF RSNLHLGGSA TAATASEEEQ EVAVRSAHAL GLTVAGVDLI 250
    RSRRGPLVLE VNPTPGLEGI EATSGTNVAI KIVHHVEEML ATICSSNICQ 300
    P 301
    Length:301
    Mass (Da):32,678
    Last modified:April 8, 2008 - v1
    Checksum:i902ECC728AA0C77F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000941 Genomic DNA. Translation: ACA12964.1.
    RefSeqiYP_001776594.1. NC_010513.1.

    Genome annotation databases

    EnsemblBacteriaiACA12964; ACA12964; Xfasm12_2103.
    GeneIDi6120308.
    KEGGixfm:Xfasm12_2103.
    PATRICi24141059. VBIXylFas124301_2467.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000941 Genomic DNA. Translation: ACA12964.1 .
    RefSeqi YP_001776594.1. NC_010513.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 405440.Xfasm12_2103.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACA12964 ; ACA12964 ; Xfasm12_2103 .
    GeneIDi 6120308.
    KEGGi xfm:Xfasm12_2103.
    PATRICi 24141059. VBIXylFas124301_2467.

    Phylogenomic databases

    eggNOGi COG0189.
    HOGENOMi HOG000293092.
    KOi K05844.
    OMAi CREPRLY.
    OrthoDBi EOG6DZDX8.

    Enzyme and pathway databases

    BioCyci XFAS405440:GH0D-2145-MONOMER.

    Family and domain databases

    Gene3Di 3.30.470.20. 1 hit.
    3.40.50.20. 1 hit.
    HAMAPi MF_01552. RimK.
    InterProi IPR011761. ATP-grasp.
    IPR013651. ATP-grasp_RimK-type.
    IPR013816. ATP_grasp_subdomain_2.
    IPR016185. PreATP-grasp_dom.
    IPR023533. Ribosomal_S6_modifier_RimK.
    IPR004666. RpS6_RimK/Lys_biosynth_LsyX.
    [Graphical view ]
    Pfami PF08443. RimK. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00768. rimK_fam. 1 hit.
    PROSITEi PS50975. ATP_GRASP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Whole genome sequences of two Xylella fastidiosa strains (M12 and M23) causing almond leaf scorch disease in California."
      Chen J., Xie G., Han S., Chertkov O., Sims D., Civerolo E.L.
      J. Bacteriol. 192:4534-4534(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: M12.

    Entry informationi

    Entry nameiRIMK_XYLFM
    AccessioniPrimary (citable) accession number: B0U5E6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 14, 2009
    Last sequence update: April 8, 2008
    Last modified: October 1, 2014
    This is version 48 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3