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B0U287 (B0U287_XYLFM) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Alpha-L-fucosidase EMBL ACA11126.1
Gene names
Ordered Locus Names:Xfasm12_0086
OrganismXylella fastidiosa (strain M12) [Complete proteome] [HAMAP]
Taxonomic identifier405440 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xylella

Protein attributes

Sequence length460 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ACA11126.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcell adhesion

Inferred from electronic annotation. Source: InterPro

fucose metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionalpha-L-fucosidase activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2929 Potential EMBL ACA11126.1
Chain30 – 460431 Potential EMBL ACA11126.1
PRO_5000309304

Sequences

Sequence LengthMass (Da)Tools
B0U287 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: CBB171B94431C4BB

FASTA46051,449
        10         20         30         40         50         60 
MTQGSLFASL RVLIRFCLAV LICPVAIAQN VAAMKPSPQQ IAWQDLEFGV IVHFNPNTWL 

        70         80         90        100        110        120 
DQEWGDGSAN PKVFNPTHVD PGQWARAAKA AGAKYLILVA KHHDGFALWP TAQSEYSVKN 

       130        140        150        160        170        180 
SPWMGGKGDV VKLTAAAVRQ QGMGFGIYLS PWDRHEPKYA NVDAYNQFYA AQLVELASHY 

       190        200        210        220        230        240 
GPLTEWWLDG AGSAGHEYDF DKYLEQLRTY QPNTMVFADT ALFKYGDIRW VGNEAGVIEG 

       250        260        270        280        290        300 
ENWNVIDRHG DLRWRPVEVD TPLHRLEWFW HPNNERTLKS VDELLTIWEK SVGRGGQLVL 

       310        320        330        340        350        360 
GIAPDTRGLL PEADVKRLQA MGAAIQARYG AGKNLVPVHV KNHQAIVAAV DSDVDTFWSA 

       370        380        390        400        410        420 
PHGSHSAMLE LHFKQPITFD AALTMEWLND GQLVQKYAIE VWQKGKWVRV AQAQAIGKMK 

       430        440        450        460 
IDHFGSLTAS RVRLNILSSV DAAHIREFQL FNIGNSRAAH

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References

[1]"Whole genome sequences of two Xylella fastidiosa strains (M12 and M23) causing almond leaf scorch disease in California."
Chen J., Xie G., Han S., Chertkov O., Sims D., Civerolo E.L.
J. Bacteriol. 192:4534-4534(2010) [PubMed: 20601474] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000941 Genomic DNA. Translation: ACA11126.1.
RefSeqYP_001774756.1. NC_010513.1.

3D structure databases

ProteinModelPortalB0U287.
ModBaseSearch...

Protein-protein interaction databases

STRINGB0U287.

Protein family/group databases

CAZyGH29. Glycoside Hydrolase Family 29.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6119796.
GenomeReviewsGene locus Xfasm12_0086 in contig CP000941_GR.
KEGGxfm:Xfasm12_0086.
PATRIC24136265. VBIXylFas124301_0109.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG697253.
OMAWIANENA.
ProtClustDBCLSK557105.

Enzyme and pathway databases

BioCycXFAS405440:XFASM12_0086-MONOMER.

Family and domain databases

InterProIPR000421. Coagulation_fac_5/8-C_type_dom.
IPR008979. Galactose-bd-like.
IPR000933. Glyco_hydro_29.
IPR016286. Glyco_hydro_29_sub.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KOK01206.
PANTHERPTHR10030. Glyco_hydro_29. 1 hit.
PfamPF01120. Alpha_L_fucos. 1 hit.
PF00754. F5_F8_type_C. 1 hit.
[Graphical view]
PRINTSPR00741. GLHYDRLASE29.
SMARTSM00812. Alpha_L_fucos. 1 hit.
[Graphical view]
SUPFAMSSF49785. Gal_bind_like. 1 hit.
SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB0U287_XYLFM
AccessionPrimary (citable) accession number: B0U287
Entry history
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: December 14, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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