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B0U1R0

- B0U1R0_XYLFM

UniProt

B0U1R0 - B0U1R0_XYLFM

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Protein

tRNA pseudouridine synthase B

Gene
truB, Xfasm12_0205
Organism
Xylella fastidiosa (strain M12)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs By similarity.UniRule annotationSAAS annotations

Catalytic activityi

tRNA uridine(55) = tRNA pseudouridine(55).UniRule annotationSAAS annotations

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei46 – 461Nucleophile By similarityUniRule annotation

GO - Molecular functioni

  1. lyase activity Source: UniProtKB-KW
  2. pseudouridine synthase activity Source: UniProtKB-HAMAP
  3. RNA binding Source: InterPro

GO - Biological processi

  1. tRNA pseudouridine synthesis Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotations, LyaseImported

Keywords - Biological processi

tRNA processingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciXFAS405440:GH0D-220-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase BUniRule annotation (EC:5.4.99.25UniRule annotation)
Alternative name(s):
tRNA pseudouridine(55) synthase
tRNA pseudouridylate synthase
tRNA-uridine isomerase
Gene namesi
Name:truBUniRule annotation
Ordered Locus Names:Xfasm12_0205Imported
OrganismiXylella fastidiosa (strain M12)Imported
Taxonomic identifieri405440 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXylella
ProteomesiUP000008539: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi405440.Xfasm12_0205.

Structurei

3D structure databases

ProteinModelPortaliB0U1R0.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0130.
HOGENOMiHOG000231223.
KOiK03177.
OMAiYELQFIR.
OrthoDBiEOG6358D3.

Family and domain databases

Gene3Di2.30.130.10. 1 hit.
HAMAPiMF_01080. TruB_bact.
InterProiIPR002501. PsdUridine_synth.
IPR020103. PsdUridine_synth_cat_dom.
IPR015947. PUA-like_domain.
IPR014780. tRNA_psdUridine_synth_TruB.
IPR015240. tRNA_sdUridine_synth_fam1_C.
[Graphical view]
PANTHERiPTHR13767. PTHR13767. 1 hit.
PfamiPF09157. TruB-C_2. 1 hit.
PF01509. TruB_N. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
SSF88697. SSF88697. 1 hit.
TIGRFAMsiTIGR00431. TruB. 1 hit.

Sequencei

Sequence statusi: Complete.

B0U1R0-1 [UniParc]FASTAAdd to Basket

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MSRIAYRRLD GILLLDKPAG ISSNSALQVA RRLLRAKKGG HTGSLDPLAT    50
GLLPLCFGEA TKIAGLLLDS TKAYDADVLL GTTTTTDDAE GAVLLTRPVP 100
TLDAEMVDAL IPQLIGRIRQ RAPIYSALKQ GGEPLYVKAR RGEVVNAPVR 150
EVEVHAIELL VLATPRLQLR VTCGSGTYIR SLVRDLGEIL GCGAHITALR 200
RRWVAPFHIP KMLTLDSLEQ ALSAGRDPDS LLLPLVEGLA GFPALELDAQ 250
RLACFRLGQR LRDHSFQTGR VAVFSRDGIP AGLGEVDSEG LLVPQRLFNL 300
Length:300
Mass (Da):32,372
Last modified:April 8, 2008 - v1
Checksum:i33B2B071AA58691A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000941 Genomic DNA. Translation: ACA11238.1.
RefSeqiYP_001774868.1. NC_010513.1.

Genome annotation databases

EnsemblBacteriaiACA11238; ACA11238; Xfasm12_0205.
GeneIDi6119707.
KEGGixfm:Xfasm12_0205.
PATRICi24136575. VBIXylFas124301_0254.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000941 Genomic DNA. Translation: ACA11238.1 .
RefSeqi YP_001774868.1. NC_010513.1.

3D structure databases

ProteinModelPortali B0U1R0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 405440.Xfasm12_0205.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACA11238 ; ACA11238 ; Xfasm12_0205 .
GeneIDi 6119707.
KEGGi xfm:Xfasm12_0205.
PATRICi 24136575. VBIXylFas124301_0254.

Phylogenomic databases

eggNOGi COG0130.
HOGENOMi HOG000231223.
KOi K03177.
OMAi YELQFIR.
OrthoDBi EOG6358D3.

Enzyme and pathway databases

BioCyci XFAS405440:GH0D-220-MONOMER.

Family and domain databases

Gene3Di 2.30.130.10. 1 hit.
HAMAPi MF_01080. TruB_bact.
InterProi IPR002501. PsdUridine_synth.
IPR020103. PsdUridine_synth_cat_dom.
IPR015947. PUA-like_domain.
IPR014780. tRNA_psdUridine_synth_TruB.
IPR015240. tRNA_sdUridine_synth_fam1_C.
[Graphical view ]
PANTHERi PTHR13767. PTHR13767. 1 hit.
Pfami PF09157. TruB-C_2. 1 hit.
PF01509. TruB_N. 1 hit.
[Graphical view ]
SUPFAMi SSF55120. SSF55120. 1 hit.
SSF88697. SSF88697. 1 hit.
TIGRFAMsi TIGR00431. TruB. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Whole genome sequences of two Xylella fastidiosa strains (M12 and M23) causing almond leaf scorch disease in California."
    Chen J., Xie G., Han S., Chertkov O., Sims D., Civerolo E.L.
    J. Bacteriol. 192:4534-4534(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: M12.

Entry informationi

Entry nameiB0U1R0_XYLFM
AccessioniPrimary (citable) accession number: B0U1R0
Entry historyi
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: June 11, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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