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B0U1R0

- B0U1R0_XYLFM

UniProt

B0U1R0 - B0U1R0_XYLFM

Protein

tRNA pseudouridine synthase B

Gene

truB

Organism
Xylella fastidiosa (strain M12)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (08 Apr 2008)
      Previous versions | rss
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    Functioni

    Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.UniRule annotationSAAS annotation

    Catalytic activityi

    tRNA uridine(55) = tRNA pseudouridine(55).UniRule annotationSAAS annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei46 – 461NucleophileUniRule annotation

    GO - Molecular functioni

    1. lyase activity Source: UniProtKB-KW
    2. pseudouridine synthase activity Source: UniProtKB-HAMAP
    3. RNA binding Source: InterPro

    GO - Biological processi

    1. tRNA pseudouridine synthesis Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotation, LyaseImported

    Keywords - Biological processi

    tRNA processingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciXFAS405440:GH0D-220-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    tRNA pseudouridine synthase BUniRule annotation (EC:5.4.99.25UniRule annotation)
    Alternative name(s):
    tRNA pseudouridine(55) synthaseUniRule annotation
    tRNA pseudouridylate synthaseUniRule annotation
    tRNA-uridine isomeraseUniRule annotation
    Gene namesi
    Name:truBUniRule annotation
    Ordered Locus Names:Xfasm12_0205Imported
    OrganismiXylella fastidiosa (strain M12)Imported
    Taxonomic identifieri405440 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXylella
    ProteomesiUP000008539: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi405440.Xfasm12_0205.

    Structurei

    3D structure databases

    ProteinModelPortaliB0U1R0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0130.
    HOGENOMiHOG000231223.
    KOiK03177.
    OMAiYELQFIR.
    OrthoDBiEOG6358D3.

    Family and domain databases

    Gene3Di2.30.130.10. 1 hit.
    HAMAPiMF_01080. TruB_bact.
    InterProiIPR002501. PsdUridine_synth.
    IPR020103. PsdUridine_synth_cat_dom.
    IPR015947. PUA-like_domain.
    IPR014780. tRNA_psdUridine_synth_TruB.
    IPR015240. tRNA_sdUridine_synth_fam1_C.
    [Graphical view]
    PANTHERiPTHR13767. PTHR13767. 1 hit.
    PfamiPF09157. TruB-C_2. 1 hit.
    PF01509. TruB_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF55120. SSF55120. 1 hit.
    SSF88697. SSF88697. 1 hit.
    TIGRFAMsiTIGR00431. TruB. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B0U1R0-1 [UniParc]FASTAAdd to Basket

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    MSRIAYRRLD GILLLDKPAG ISSNSALQVA RRLLRAKKGG HTGSLDPLAT    50
    GLLPLCFGEA TKIAGLLLDS TKAYDADVLL GTTTTTDDAE GAVLLTRPVP 100
    TLDAEMVDAL IPQLIGRIRQ RAPIYSALKQ GGEPLYVKAR RGEVVNAPVR 150
    EVEVHAIELL VLATPRLQLR VTCGSGTYIR SLVRDLGEIL GCGAHITALR 200
    RRWVAPFHIP KMLTLDSLEQ ALSAGRDPDS LLLPLVEGLA GFPALELDAQ 250
    RLACFRLGQR LRDHSFQTGR VAVFSRDGIP AGLGEVDSEG LLVPQRLFNL 300
    Length:300
    Mass (Da):32,372
    Last modified:April 8, 2008 - v1
    Checksum:i33B2B071AA58691A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000941 Genomic DNA. Translation: ACA11238.1.
    RefSeqiYP_001774868.1. NC_010513.1.

    Genome annotation databases

    EnsemblBacteriaiACA11238; ACA11238; Xfasm12_0205.
    GeneIDi6119707.
    KEGGixfm:Xfasm12_0205.
    PATRICi24136575. VBIXylFas124301_0254.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000941 Genomic DNA. Translation: ACA11238.1 .
    RefSeqi YP_001774868.1. NC_010513.1.

    3D structure databases

    ProteinModelPortali B0U1R0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 405440.Xfasm12_0205.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACA11238 ; ACA11238 ; Xfasm12_0205 .
    GeneIDi 6119707.
    KEGGi xfm:Xfasm12_0205.
    PATRICi 24136575. VBIXylFas124301_0254.

    Phylogenomic databases

    eggNOGi COG0130.
    HOGENOMi HOG000231223.
    KOi K03177.
    OMAi YELQFIR.
    OrthoDBi EOG6358D3.

    Enzyme and pathway databases

    BioCyci XFAS405440:GH0D-220-MONOMER.

    Family and domain databases

    Gene3Di 2.30.130.10. 1 hit.
    HAMAPi MF_01080. TruB_bact.
    InterProi IPR002501. PsdUridine_synth.
    IPR020103. PsdUridine_synth_cat_dom.
    IPR015947. PUA-like_domain.
    IPR014780. tRNA_psdUridine_synth_TruB.
    IPR015240. tRNA_sdUridine_synth_fam1_C.
    [Graphical view ]
    PANTHERi PTHR13767. PTHR13767. 1 hit.
    Pfami PF09157. TruB-C_2. 1 hit.
    PF01509. TruB_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55120. SSF55120. 1 hit.
    SSF88697. SSF88697. 1 hit.
    TIGRFAMsi TIGR00431. TruB. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Whole genome sequences of two Xylella fastidiosa strains (M12 and M23) causing almond leaf scorch disease in California."
      Chen J., Xie G., Han S., Chertkov O., Sims D., Civerolo E.L.
      J. Bacteriol. 192:4534-4534(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: M12Imported.

    Entry informationi

    Entry nameiB0U1R0_XYLFM
    AccessioniPrimary (citable) accession number: B0U1R0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 8, 2008
    Last sequence update: April 8, 2008
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3