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Protein

Arginine--tRNA ligase

Gene

argS

Organism
Xylella fastidiosa (strain M12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionAminoacyl-tRNA synthetase, Ligase
Biological processProtein biosynthesis
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Arginine--tRNA ligaseUniRule annotation (EC:6.1.1.19UniRule annotation)
Alternative name(s):
Arginyl-tRNA synthetaseUniRule annotation
Short name:
ArgRSUniRule annotation
Gene namesi
Name:argSUniRule annotation
Ordered Locus Names:Xfasm12_0124
OrganismiXylella fastidiosa (strain M12)
Taxonomic identifieri405440 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXylella

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000954241 – 562Arginine--tRNA ligaseAdd BLAST562

Interactioni

Subunit structurei

Monomer.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliB0U1H9.
SMRiB0U1H9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi129 – 139"HIGH" regionAdd BLAST11

Sequence similaritiesi

Belongs to the class-I aminoacyl-tRNA synthetase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000247214.
KOiK01887.
OMAiNKPLHLG.

Family and domain databases

CDDicd00671. ArgRS_core. 1 hit.
Gene3Di3.30.1360.70. 1 hit.
3.40.50.620. 2 hits.
HAMAPiMF_00123. Arg_tRNA_synth. 1 hit.
InterProiView protein in InterPro
IPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-ligase.
IPR005148. Arg-tRNA-synth_N.
IPR036695. Arg-tRNA-synth_N_sf.
IPR035684. ArgRS_core.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_Ia_anticodon-bd.
PANTHERiPTHR11956. PTHR11956. 1 hit.
PfamiView protein in Pfam
PF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 1 hit.
PRINTSiPR01038. TRNASYNTHARG.
SMARTiView protein in SMART
SM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
SUPFAMiSSF47323. SSF47323. 1 hit.
SSF55190. SSF55190. 1 hit.
TIGRFAMsiTIGR00456. argS. 1 hit.
PROSITEiView protein in PROSITE
PS00178. AA_TRNA_LIGASE_I. 1 hit.

Sequencei

Sequence statusi: Complete.

B0U1H9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAPLRALIC QGIEALRSNG TLPTNTLPPD FVVERPKTRK HGDFATNVAM
60 70 80 90 100
LLSKATGSNP RLLAQTLVAA LPTSADIARI EIAGPGFINF HMHPVAYQHE
110 120 130 140 150
TINVLKQDND YGRNLSGQSR TVGVEYVSAN PTGPLHVGHG RAAAIGDCLA
160 170 180 190 200
RLLEANGWNV KREFYYNDAG VQIDNLVRSV QARARGLKPG DALWPTDAYN
210 220 230 240 250
GEYIADIAKA YLAGDSINMV DTIITSTKNV DDTAAIHHFA VNYLRNEQNH
260 270 280 290 300
DLAAFNVDFD IYFLESSLYK DGKVEETVQK LINSGHTYEE GGALWLKSTH
310 320 330 340 350
FGDDKDRVMR KSDGSYTYFV PDIAYHLSKW QRGYERAITE LGADHHGSLA
360 370 380 390 400
RVHAGLQALE IGIPPGWPEY VLHQMVTVMR GGEEVKLSKR SGGYVTLRDL
410 420 430 440 450
IEETSTDATR WFLIARKPDS QLTFDIDLAR QKSNDNPVFY VQYAYARVCS
460 470 480 490 500
LMHQAHEKNL NYDQTSGMAS LDQLSDNTSL CLMIEISRYP EIVQIACELL
510 520 530 540 550
EPHLIAQYLR ELAHAFHTWY HNTPVLVENA VERNAKLTLA CATRQVLANG
560
LNLLGVGTPE KM
Length:562
Mass (Da):62,536
Last modified:April 8, 2008 - v1
Checksum:iF5DC691A2B9BA9F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000941 Genomic DNA. Translation: ACA11163.1.
RefSeqiWP_012337565.1. NC_010513.1.

Genome annotation databases

EnsemblBacteriaiACA11163; ACA11163; Xfasm12_0124.
KEGGixfm:Xfasm12_0124.

Similar proteinsi

Entry informationi

Entry nameiSYR_XYLFM
AccessioniPrimary (citable) accession number: B0U1H9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 24, 2009
Last sequence update: April 8, 2008
Last modified: November 22, 2017
This is version 62 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Documents

  1. Aminoacyl-tRNA synthetases
    List of aminoacyl-tRNA synthetase entries
  2. SIMILARITY comments
    Index of protein domains and families