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B0TRP3 (B0TRP3_SHEHH) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 2 HAMAP MF_00163
Short name=PDF 2 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 2 HAMAP MF_00163
Gene names
Name:def2 HAMAP MF_00163
Ordered Locus Names:Shal_1896
OrganismShewanella halifaxensis (strain HAW-EB4) [Complete proteome] [HAMAP] EMBL ABZ76461.1
Taxonomic identifier458817 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length163 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1341 By similarity HAMAP MF_00163
Metal binding911Iron By similarity HAMAP MF_00163
Metal binding1331Iron By similarity HAMAP MF_00163
Metal binding1371Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
B0TRP3 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: 6D8E8DFD91B883B3

FASTA16318,287
        10         20         30         40         50         60 
MAVLDILTIP DERLKRKAVP VTDIESVQGF IDDLIETMYD TDDGIGLAAT QVGSLHAILV 

        70         80         90        100        110        120 
IDLSDERDQP MVLINPEFLE SRGEYQGEEG CLSIPGYRAK VNRHQGVKVT ALDRHGKAFE 

       130        140        150        160 
IDTDEFLAIV LQHEMDHLNG VVFTDHLSML KQQVALKKVK KYK

« Hide

References

[1]"Complete sequence of Shewanella halifaxensis HAW-EB4."
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Kim E., Zhao J.-S., Richardson P.
Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HAW-EB4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000931 Genomic DNA. Translation: ABZ76461.1.
RefSeqYP_001674120.1. NC_010334.1.

3D structure databases

ProteinModelPortalB0TRP3.
SMRB0TRP3. Positions 2-162.
ModBaseSearch...

Protein-protein interaction databases

STRINGB0TRP3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5902732.
GenomeReviewsGene locus Shal_1896 in contig CP000931_GR.
KEGGshl:Shal_1896.
PATRIC23506485. VBISheHal24697_1990.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG665227.
OMAEINSHIL.
ProtClustDBPRK12846.

Enzyme and pathway databases

BioCycSHAL458817:SHAL_1896-MONOMER.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB0TRP3_SHEHH
AccessionPrimary (citable) accession number: B0TRP3
Entry history
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: December 14, 2011
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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