B0TQV4 (B0TQV4_SHEHH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Exodeoxyribonuclease I EMBL ABZ76349.1
EC=3.1.11.1 EMBL ABZ76349.1

Gene names

Ordered Locus Names:

Shal_1784

Organism

Shewanella halifaxensis (strain HAW-EB4) [Complete proteome] [HAMAP] EMBL ABZ76349.1

Taxonomic identifier

458817 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella › Shewanella halifaxensis

Protein attributes

Sequence length	493 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Hydrolase EMBL ABZ76349.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	exodeoxyribonuclease I activity Inferred from electronic annotation. Source: EC nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0TQV4 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: 94F84A4A6038CEF3	FASTA	493	56,714
	10 20 30 40 50 60 MQTNKTQPKP LIVKTKTTLK RNKENMSEHP TIFWHDYETF GANPAKDRPS QFAGVRTDLD 70 80 90 100 110 120 LNIIGEPETF YCKLANDYLP SPEAILITGI TPQLANLKGM PEAEFMDKIN GLFSQPKTCV 130 140 150 160 170 180 VGYNSLRFDD EVSRYGFYRN FIDPYAREWQ NGNTRWDIID LVRACYAFRP EGINWPEKED 190 200 210 220 230 240 GSPSFKLEQL TVANGLSHEK AHDAMSDVYA TIDMAKLIKT VQPKLFDYYF SLRQKQQVSK 250 260 270 280 290 300 LIDVLEMKPL VHVSSKISAL NGCTTIIAPV AYHSTNKNAV ICVNLAMDVT PLIELSVEEI 310 320 330 340 350 360 RERMYTRRSD LAPDELPIGL KQVHINKSPF IAAANTLTDE NAARLDFDKA FAREQFRKLK 370 380 390 400 410 420 QHPELREKLV AVFDVEHDSK AVDPDQALYS GGFFSSADKA KIEIIRNTKP SNLAALELDF 430 440 450 460 470 480 DDSRLAEMLF RYRARNYPET LDDSEQYRWR EFCQTRLNDP DYIIRLENLL EETEQDESKQ 490 KLLQALCHYL RNL

References

[1]

"Complete sequence of Shewanella halifaxensis HAW-EB4." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Kim E., Zhao J.-S., Richardson P. Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HAW-EB4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000931 Genomic DNA. Translation: ABZ76349.1.
RefSeq	YP_001674008.1. NC_010334.1.
3D structure databases
ProteinModelPortal	B0TQV4.
SMR	B0TQV4. Positions 29-493.
ModBase	Search...
Protein-protein interaction databases
STRING	458817.Shal_1784.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABZ76349; ABZ76349; Shal_1784.
GeneID	5902630.
KEGG	shl:Shal_1784.
PATRIC	23506243. VBISheHal24697_1872.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2925.
HOGENOM	HOG000276591.
KO	K01141.
OMA	PYAREWQ.
ProtClustDB	PRK11779.
Enzyme and pathway databases
BioCyc	SHAL458817:GH1X-1843-MONOMER.
Family and domain databases
InterPro	IPR023607. Exodeoxyribonuclease_I. IPR013620. Exonuc_X-T_C. IPR013520. Exonuclease_RNaseT/DNA_pol3. IPR012337. RNaseH-like_dom. [Graphical view]
Pfam	PF08411. Exonuc_X-T_C. 1 hit. PF00929. RNase_T. 1 hit. [Graphical view]
PIRSF	PIRSF000977. Exodeoxyribonuclease_I. 1 hit.
SUPFAM	SSF53098. RNaseH_fold. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B0TQV4_SHEHH

Accession

Primary (citable) accession number: B0TQV4

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)