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Protein

Glutamate decarboxylase

Gene

Shal_3043

Organism
Shewanella halifaxensis (strain HAW-EB4)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciSHAL458817:GH1X-3143-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Ordered Locus Names:Shal_3043Imported
OrganismiShewanella halifaxensis (strain HAW-EB4)Imported
Taxonomic identifieri458817 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000001317 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi458817.Shal_3043.

Structurei

3D structure databases

ProteinModelPortaliB0TPE4.
SMRiB0TPE4. Positions 7-448.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
KOiK01580.
OMAiDPDLVWD.
OrthoDBiEOG6TFCPW.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

B0TPE4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPLHSKDTVR DDLLDDIYSS TDLALSMPKY KMPEQENNSR HAYQIVHDEL
60 70 80 90 100
MMDGNSRQNL ATFCQTWVED EVHQLMDECI DKNMIDKDEY PQTAELEARC
110 120 130 140 150
VHMLADLWNS PDAENTLGCS TTGSSEAAML GGMALKWAWR KKMKALGKPT
160 170 180 190 200
DKPNMICGPV QVCWHKFARY WDIELREIPM EGDRLIMNAE EVIKRCDENT
210 220 230 240 250
IGVVPTLGVT FTCQYEPVKA VHDALDQLQK DTGLDIPMHV DAASGGFLAP
260 270 280 290 300
FCQPDLEWDF KLPRVKSINA SGHKFGLSPL GVGWVIWRDA SVLDEDLIFN
310 320 330 340 350
VNYLGGNMPT FALNFSRPGG QIVAQYYNFL RLGKEGYRKI HQACYDTAQY
360 370 380 390 400
LSSEIEKLGM FEIIYDGHGG IPAMSWSLKE GVDPGFNLFD LSDRIRSRGW
410 420 430 440 450
QIAAYAMPPK REDLVIMRIL VRHGFSRDQA DLLVADLKHC VDFFASHPIS
460
HGSDAKESSG FNHG
Length:464
Mass (Da):52,394
Last modified:April 8, 2008 - v1
Checksum:i36E4102AEFD4FC78
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000931 Genomic DNA. Translation: ABZ77591.1.
RefSeqiWP_012278117.1. NC_010334.1.
YP_001675250.1. NC_010334.1.

Genome annotation databases

EnsemblBacteriaiABZ77591; ABZ77591; Shal_3043.
KEGGishl:Shal_3043.
PATRICi23508973. VBISheHal24697_3194.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000931 Genomic DNA. Translation: ABZ77591.1.
RefSeqiWP_012278117.1. NC_010334.1.
YP_001675250.1. NC_010334.1.

3D structure databases

ProteinModelPortaliB0TPE4.
SMRiB0TPE4. Positions 7-448.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi458817.Shal_3043.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABZ77591; ABZ77591; Shal_3043.
KEGGishl:Shal_3043.
PATRICi23508973. VBISheHal24697_3194.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
KOiK01580.
OMAiDPDLVWD.
OrthoDBiEOG6TFCPW.

Enzyme and pathway databases

BioCyciSHAL458817:GH1X-3143-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HAW-EB4Imported.

Entry informationi

Entry nameiB0TPE4_SHEHH
AccessioniPrimary (citable) accession number: B0TPE4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: April 29, 2015
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.