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B0TMM4 (B0TMM4_SHEHH) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Alanine racemase EMBL ABZ77384.1
EC=5.1.1.1 EMBL ABZ77384.1
Gene names
Ordered Locus Names:Shal_2833
OrganismShewanella halifaxensis (strain HAW-EB4) [Complete proteome] [HAMAP] EMBL ABZ77384.1
Taxonomic identifier458817 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella ›

Protein attributes

Sequence length406 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622

Sequence similarities

Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
   Molecular functionIsomerase SAAS SAAS020622 RuleBase RU000608 EMBL ABZ77384.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processD-alanine biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-UniPathway

   Molecular_functionalanine racemase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B0TMM4 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: C4D83068A2A3029E

FASTA40643,841
        10         20         30         40         50         60 
MKTKYTIIAM FVASIGSFST VAAPFLPSDG VSPVEAVQAA NSWLEVNLTQ FDSNIKELKN 

        70         80         90        100        110        120 
HIQSNVKVCA IMKADAYGNG IAGLMPTVLA NNIPCIGVTS NEEIRIVRDA GFRGSLIRVR 

       130        140        150        160        170        180 
SASIAEISDT LQYDVEEFVG DANQATLLSA MAAKLDKPLK VHLVLNSGGM GRNGVDVSTQ 

       190        200        210        220        230        240 
SGLNEAVQIA TTADLDVVGI MTHFPSYDRD DVLVKSKSFY NSALNIIEES GLKRDSVTIH 

       250        260        270        280        290        300 
SGNSYVALNV PEAHFDMVRP GGVLYGDQPT NPEFPSIVTF KTRIASLVDL PKGATVGYDS 

       310        320        330        340        350        360 
TIKLERESLL ANLPVGYSDS FPRKMGNTAD VLVNGQRAKV MGVISMNTSM IDVTDLSGVK 

       370        380        390        400 
EGDEVVLFGY QGKESILAPE FEKNADVIFP EIYTQWGQTN PRIYVK

« Hide

References

[1]"Complete sequence of Shewanella halifaxensis HAW-EB4."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Kim E., Zhao J.-S., Richardson P.
Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HAW-EB4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000931 Genomic DNA. Translation: ABZ77384.1.
RefSeqYP_001675043.1. NC_010334.1.

3D structure databases

ProteinModelPortalB0TMM4.
ModBaseSearch...

Protein-protein interaction databases

STRING458817.Shal_2833.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABZ77384; ABZ77384; Shal_2833.
GeneID5902952.
KEGGshl:Shal_2833.
PATRIC23508539. VBISheHal24697_2977.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0787.
HOGENOMHOG000279190.
KOK01775.
OMANTVGYDR.
ProtClustDBPRK13340.

Enzyme and pathway databases

BioCycSHAL458817:GH1X-2933-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB0TMM4_SHEHH
AccessionPrimary (citable) accession number: B0TMM4
Entry history
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: May 1, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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