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B0TM80 (RLMF_SHEHH) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribosomal RNA large subunit methyltransferase F
EC=2.1.1.181
Alternative name(s):
23S rRNA mA1618 methyltransferase
rRNA adenine N-6-methyltransferase
Gene names
Name:rlmF
Ordered Locus Names:Shal_0097
OrganismShewanella halifaxensis (strain HAW-EB4) [Complete proteome] [HAMAP]
Taxonomic identifier458817 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length380 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Specifically methylates the adenine in position 1618 of 23S rRNA By similarity. HAMAP MF_01848

Catalytic activity

S-adenosyl-L-methionine + adenine(1618) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(1618) in 23S rRNA. HAMAP MF_01848

Subcellular location

Cytoplasm Potential HAMAP MF_01848.

Sequence similarities

Belongs to the methyltransferase superfamily. METTL16/rlmF family.

Ontologies

Keywords
   Biological processrRNA processing
   Cellular componentCytoplasm
   LigandS-adenosyl-L-methionine
   Molecular functionMethyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionrRNA (adenine-N6-)-methyltransferase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 380380Ribosomal RNA large subunit methyltransferase F HAMAP MF_01848
PRO_0000349956

Sequences

Sequence LengthMass (Da)Tools
B0TM80 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: 7F5481315855A0BF

FASTA38042,108
        10         20         30         40         50         60 
MSHKTKPSTQ ERKAGKPSAP KRKVISKSPN SKLKTIVKGQ KNTAVKAQTS KPLHPRNVHN 

        70         80         90        100        110        120 
KGYDFPALIA AFAALKSFVK PNPYGNLSID FADPQAVKML NAALLKLHYD VEHWDIPAGF 

       130        140        150        160        170        180 
LCPPIPGRAD YIHYVADLLA VKKSSKKRVP KGPRVKVLDI GTGANVIYPL LGIQSYGWSF 

       190        200        210        220        230        240 
VGSDVDPLSI ANAQQVFASN PAIAARFNSR LQTNAKHVFH GVIEPNERFD ITLCNPPFHA 

       250        260        270        280        290        300 
SLAEASEGTA RKLKNLAANR AKSSEAKPLR STKPVVTKTE TPLNFGGQKA ELWCEGGELQ 

       310        320        330        340        350        360 
FLQTMISESH EFASQCLWFT TLVSKKENLK PAKALLAKVK AEEVKEMEMH QGNKITRVLA 

       370        380 
WTFLKPEQRE LWAQYRDVEN

« Hide

References

[1]"Complete sequence of Shewanella halifaxensis HAW-EB4."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Kim E., Zhao J.-S., Richardson P.
Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HAW-EB4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000931 Genomic DNA. Translation: ABZ74673.1.
RefSeqYP_001672332.1. NC_010334.1.

3D structure databases

ProteinModelPortalB0TM80.
ModBaseSearch...

Protein-protein interaction databases

STRINGB0TM80.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5903864.
GenomeReviewsGene locus Shal_0097 in contig CP000931_GR.
KEGGshl:Shal_0097.
PATRIC23502596. VBISheHal24697_0106.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG747880.
OMAWSFVGSD.
ProtClustDBPRK11727.

Enzyme and pathway databases

BioCycSHAL458817:SHAL_0097-MONOMER.

Family and domain databases

HAMAPMF_01848. 23SrRNA_methyltr_F.
[Tree]
InterProIPR016909. rRNA_lsu_methyltransferase_F.
IPR010286. SAM-Mtase_prd.
[Graphical view]
KOK06970.
PANTHERPTHR13393. DUF890. 1 hit.
PfamPF05971. Methyltransf_10. 1 hit.
[Graphical view]
PIRSFPIRSF029038. Mtase_YbiN_prd. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRLMF_SHEHH
AccessionPrimary (citable) accession number: B0TM80
Entry history
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: April 8, 2008
Last modified: January 25, 2012
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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