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B0TLY2 (B0TLY2_SHEHH) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Pyridoxal-dependent decarboxylase EMBL ABZ77354.1
Gene names
Ordered Locus Names:Shal_2801
OrganismShewanella halifaxensis (strain HAW-EB4) [Complete proteome] [HAMAP] EMBL ABZ77354.1
Taxonomic identifier458817 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella ›

Protein attributes

Sequence length548 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000382
   Molecular functionLyase RuleBase RU000382
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarboxylic acid metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncarboxy-lyase activity

Inferred from electronic annotation. Source: InterPro

pyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B0TLY2 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: 3A2B80F5D6B7D75F

FASTA54860,391
        10         20         30         40         50         60 
MTARKATASE EALLRIFTVP EAPESTLSVI EQNISQNLMG FLQESVVAVE KPLSEVELDF 

        70         80         90        100        110        120 
QQYQIPSAPQ FVSDYADNMM QTLVAHSVHT SAPSFIGHMT SALPYFVLPL SKMMVGLNQN 

       130        140        150        160        170        180 
LVKIETSKAF TPLERQVLGM MHHLVYSENE AFYQSWMHSA NVSLGAFCSG GTVANITALW 

       190        200        210        220        230        240 
TARNQLLKAD GDFKGIAKQG LLKGLRHYGY DDLAILVSER GHYSLAKTAD LLGIGRENII 

       250        260        270        280        290        300 
QVPTSNDNKV DVTQMRIIAA KLAQDNIRVM AIVGVAGTTE TGSIDPLNEL ADLAAELNCH 

       310        320        330        340        350        360 
FHVDAAWGGA SLLSNKYRHL LTGIERADSV TIDAHKQMYV PMGAGMVLFK DPTFANAIKH 

       370        380        390        400        410        420 
HAEYILRQGS KDLGSQTLEG SRPGMAMLVH ACLKIIGREG YEILINNSLE KARYFADLIT 

       430        440        450        460        470        480 
AEADFELVSK PELCLLTYRY VPQSVQVAMA KARETGDIAT LTQYNQLLDG LTKFVQKRQR 

       490        500        510        520        530        540 
EQGTSFVSRT RINPESHQLM NIKAVVFRVV LANPLTSHEI LQQVLTEQAV IANSETQFLP 


QLLSLAQA

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References

[1]"Complete sequence of Shewanella halifaxensis HAW-EB4."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Kim E., Zhao J.-S., Richardson P.
Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HAW-EB4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000931 Genomic DNA. Translation: ABZ77354.1.
RefSeqYP_001675013.1. NC_010334.1.

3D structure databases

ProteinModelPortalB0TLY2.
ModBaseSearch...

Protein-protein interaction databases

STRING458817.Shal_2801.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABZ77354; ABZ77354; Shal_2801.
GeneID5902624.
KEGGshl:Shal_2801.
PATRIC23508473. VBISheHal24697_2944.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000282553.
KOK01580.
OMACHFHVDA.
ProtClustDBCLSK874231.

Enzyme and pathway databases

BioCycSHAL458817:GH1X-2901-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB0TLY2_SHEHH
AccessionPrimary (citable) accession number: B0TLY2
Entry history
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: May 1, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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