B0T675 (B0T675_CAUSK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma-54 factor PIRNR PIRNR000774

Gene names

Ordered Locus Names:

Caul_4958 EMBL ABZ74078.1

Organism

Caulobacter sp. (strain K31) [Complete proteome] [HAMAP] EMBL ABZ74078.1

Taxonomic identifier

366602 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Caulobacterales › Caulobacteraceae › Caulobacter

Protein attributes

Sequence length	502 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. PIRNR PIRNR000774
Sequence similarities	Belongs to the sigma-54 factor family. PIRNR PIRNR000774

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	DNA-directed RNA polymerase PIRNR PIRNR000774
Ligand	DNA-binding PIRNR PIRNR000774
Molecular function	Nucleotidyltransferase PIRNR PIRNR000774 Sigma factor PIRNR PIRNR000774 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0T675 [UniParc]. Last modified April 8, 2008. Version 1. Checksum: ABB0FA2F8BC1465C	FASTA	502	54,778
	10 20 30 40 50 60 MALGHRLELR QGQGLVITPQ LQQAIKLLQL SNLELDAFVE AELERNPLLQ REDGPVEAER 70 80 90 100 110 120 APEDVERAPE NLGLDSVSDS AASVQMDATP DDVSPGERAT GDGPDSEGGA EQAGGQIDWS 130 140 150 160 170 180 RTGGGGNFES DDNYESALSR APTLCEHLTE QLAVAGLTAA QNVVAGVLID AVDETGYLRA 190 200 210 220 230 240 DLLEVAERLG CGLDFVEGVL TVLQGFEPAG VMARDVRECL ALQLKDVNRY DPCMAALLDN 250 260 270 280 290 300 LDLLAKRDMA SLRKVCGVDD EDLREMVAEI RALTPRPGAA FHADPPQTLV PDVHVRETPG 310 320 330 340 350 360 GLWHVELNTD TLPRVLVDQR YHARVSKGAR TDQEKTFVSD SFATANWLVK SLDQRAKTIL 370 380 390 400 410 420 KVSSEIVRQQ DGFLAYGVEH LRPLNLKTVA DAIGMHESTV SRVTSNKYIA TPRGVFELKY 430 440 450 460 470 480 FFTSAIQSSE GGEAHSAASV RYKIKGLVEA ERTEADVHSD DRIVEILKDA GVDIARRTVA 490 500 KYREALRIPS SVERRRLIKE TA

References

[1]

"Complete sequence of chromosome of Caulobacter sp. K31." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Bruce D., Goodwin L., Thompson L.S., Brettin T., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Kim E., Stephens C., Richardson P. Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K31 EMBL ABZ74078.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000927 Genomic DNA. Translation: ABZ74078.1.
RefSeq	YP_001686576.1. NC_010338.1.
3D structure databases
ProteinModelPortal	B0T675.
ModBase	Search...
Protein-protein interaction databases
STRING	366602.Caul_4958.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABZ74078; ABZ74078; Caul_4958.
GeneID	5902420.
KEGG	cak:Caul_4958.
PATRIC	21323110. VBICauSp18104_5376.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1508.
HOGENOM	HOG000071904.
KO	K03092.
OMA	RFDPAMQ.
ProtClustDB	PRK05932.
Enzyme and pathway databases
BioCyc	CSP366602:GH0Y-5012-MONOMER.
Family and domain databases
InterPro	IPR000394. RNA_pol_sigma_54. IPR007046. RNA_pol_sigma_54_core-bd. IPR007634. RNA_pol_sigma_54_DNA-bd. [Graphical view]
Pfam	PF00309. Sigma54_AID. 1 hit. PF04963. Sigma54_CBD. 1 hit. PF04552. Sigma54_DBD. 1 hit. [Graphical view]
PIRSF	PIRSF000774. RpoN. 1 hit.
PRINTS	PR00045. SIGMA54FCT.
TIGRFAMs	TIGR02395. rpoN_sigma. 1 hit.
PROSITE	PS00717. SIGMA54_1. 1 hit. PS00718. SIGMA54_2. 1 hit. PS50044. SIGMA54_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0T675_CAUSK

Accession

Primary (citable) accession number: B0T675

Entry history

Integrated into UniProtKB/TrEMBL:	April 8, 2008
Last sequence update:	April 8, 2008
Last modified:	May 29, 2013
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)