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B0SK30 (B0SK30_LEPBP) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length660 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. PIRNR PIRNR001084

Sequence similarities

Belongs to the glycosyl hydrolase 42 family. PIRNR PIRNR001084

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1421Proton donor By similarity PIRSR PIRSR001084-1
Active site3041Nucleophile By similarity PIRSR PIRSR001084-1
Metal binding1071Zinc By similarity PIRSR PIRSR001084-3
Binding site1031Substrate By similarity PIRSR PIRSR001084-2
Binding site1411Substrate By similarity PIRSR PIRSR001084-2

Sequences

Sequence LengthMass (Da)Tools
B0SK30 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: 8619CAC0AAA94AA8

FASTA66075,646
        10         20         30         40         50         60 
MIFGACYYPE QWNPKDWDED LKMMKEMGLS SVRLAEFAWG IMEPKEGKFD FSLFDAILEK 

        70         80         90        100        110        120 
IQKQGMTAIL GTPTATFPPW LYQKFPEIVQ ISKEGIIRGI GTRRQACFSS PAYKKATERI 

       130        140        150        160        170        180 
VTAMAKHFGN HPAVVGWQID NEPGHEGSDV DYSPLAEKNF RIWLKTKYKT LDSLNKRWGN 

       190        200        210        220        230        240 
VFWGVIYSDW NQIPLPGAHV ASNFNPAMIQ DYYRFQSDEL VSYIHFQAEI LRKYSKGKPL 

       250        260        270        280        290        300 
TTNLYPSPFL PVTDMYEMFK KLDYVSWDNY PVWGNQQEPY PHPLVTATQQ YSRGLKDKPY 

       310        320        330        340        350        360 
TVMEQFSGVQ GHDTLGYLPP PGQIGLWLTQ AIVNGANQIY FFRYRTARFG QEQLCYGILD 

       370        380        390        400        410        420 
HGKRKTSKYF ELKKTIEEIK EFAEDIAASP YPAKVAILHD IENSRNYKHQ PLSDGLKFSP 

       430        440        450        460        470        480 
VPFAQVGYDI ELATWFAGTN VLNVNTHSLP IQREQDWSNY KVLTLPLYTM FGPEIVEKLK 

       490        500        510        520        530        540 
AYVQEGGTLV LGYRSGIKDK DHWMVEEPVP GVFSEMAGVE VFQFEAPATD KVGIKMGIWP 

       550        560        570        580        590        600 
LKGSKFCEIL EPTSAKVIAR YRDKKKFYSG KPAITVNSFG KGKVYYVGTS LTPESFVLLY 

       610        620        630        640        650        660 
RKILKGAGIP FGFLGATIER HFREGKKYNY EITMNHSNQY KLAGFSVLKP FGYQIKRIQK 

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References

[1]"Genome Sequence of the Saprophyte Leptospira biflexa Provides Insights into the Evolution of Leptospira and the Pathogenesis of Leptospirosis."
Picardeau M., Bulach D.M., Bouchier C., Zuerner R.L., Zidane N., Wilson P.J., Creno S., Kuczek E.S., Bommezzadri S., Davis J.C., McGrath A., Johnson M.J., Boursaux-Eude C., Seemann T., Rouy Z., Coppel R.L., Rood J.I., Lajus A. expand/collapse author list , Davies J.K., Medigue C., Adler B.
PLoS ONE 3:E1607-E1607(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Patoc 1 / ATCC 23582 / Paris.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000786 Genomic DNA. Translation: ABZ96171.1.
RefSeqYP_001837447.1. NC_010602.1.

3D structure databases

ProteinModelPortalB0SK30.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING456481.LEPBI_I0024.

Protein family/group databases

CAZyGH42. Glycoside Hydrolase Family 42.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABZ96171; ABZ96171; LEPBI_I0024.
GeneID6224131.
KEGGlbi:LEPBI_I0024.
PATRIC22346740. VBILepBif123590_0025.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1874.
HOGENOMHOG000117811.
KOK12308.
OMAMWHRDKD.
OrthoDBEOG6HMX9F.

Enzyme and pathway databases

BioCycLBIF456481:GCM0-24-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
3.40.50.880. 1 hit.
InterProIPR013738. Beta_galactosidase_Trimer.
IPR029062. Class_I_gatase-like.
IPR003476. Glyco_hydro_42.
IPR013529. Glyco_hydro_42_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamPF02449. Glyco_hydro_42. 1 hit.
PF08532. Glyco_hydro_42M. 1 hit.
[Graphical view]
PIRSFPIRSF001084. B-galactosidase. 1 hit.
SUPFAMSSF51445. SSF51445. 1 hit.
SSF52317. SSF52317. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB0SK30_LEPBP
AccessionPrimary (citable) accession number: B0SK30
Entry history
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: July 9, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)