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B0SF59 (B0SF59_LEPBA) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA topoisomerase EMBL ABZ93646.1
Gene names
Name:topA EMBL ABZ93646.1
Ordered Locus Names:LBF_1122
OrganismLeptospira biflexa serovar Patoc (strain Patoc 1 / Ames) [Complete proteome] [HAMAP]
Taxonomic identifier355278 [NCBI]
Taxonomic lineageBacteria › Spirochaetes › Spirochaetales › Leptospiraceae › Leptospira

Protein attributes

Sequence length625 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the prokaryotic type I/III topoisomerase family. RuleBase RU004206

Ontologies

Keywords
   Molecular functionIsomerase EMBL ABZ93646.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processDNA topological change

Inferred from electronic annotation. Source: InterPro

   Cellular componentchromosome

Inferred from electronic annotation. Source: InterPro

   Molecular functionDNA topoisomerase type I activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B0SF59 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: 0DB1E3B901DFBCBB

FASTA62572,507
        10         20         30         40         50         60 
MVVATKGHIK DLPPKSYGVD LSNQFEPEYE WLKGKKSLFT TITTKAKKCS LIYIASDPDR 

        70         80         90        100        110        120 
EGEIIAKHCF DELSKLKKPI YRLRLKEITK EELQSQIQKK IGLDQQEIES QIARRVIDRI 

       130        140        150        160        170        180 
FGFEVSPDLW KHLKIPSLSA GRVQSTVLHW ICEREKEIQN FSKENYFQLK LIGTLNENPI 

       190        200        210        220        230        240 
ELKYQSKEKL KQEEIQTILN EIQILPDPSR LKNIVLSNLK IKKIKRNPPK AFSTASLLES 

       250        260        270        280        290        300 
SFRALQFDSK KTMRLAQSLF EGKKLHAGET VGLITYMRSD STRVSESKQD LGEKYLKEHY 

       310        320        330        340        350        360 
PNLLWEGSRN QGKQKKFSQD AHEAITPINP SLSPEQIKSF LTLDEWKLYQ LIWERFLTSL 

       370        380        390        400        410        420 
LKPEIGEEIV YEFPIGKHIF EHSFETISDP GFKNFPRPKE KREKISLNAK IGDLFFYESY 

       430        440        450        460        470        480 
SVEEKETEPP QRYTQGKLIQ KMEDTGVGRP STYATILETL KLRKYIVEYK KNIGPSQLGL 

       490        500        510        520        530        540 
KVDSYLFLNF FDLIGESFTK DLESKLDQIT DEKASRVKLV ANFYDQLKQI LKSPRKKMVS 

       550        560        570        580        590        600 
IGKENQSKVK YDTDEKQTLS EKVKNGKGSE KKGNTKNQNQ SLTYIENKTC PKCLDGYVKT 

       610        620 
KLGKNGKTIY FCSRYPHCDY ITYDN

« Hide

References

[1]"Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis."
Picardeau M., Bulach D.M., Bouchier C., Zuerner R.L., Zidane N., Wilson P.J., Creno S., Kuczek E.S., Bommezzadri S., Davis J.C., McGrath A., Johnson M.J., Boursaux-Eude C., Seemann T., Rouy Z., Coppel R.L., Rood J.I., Lajus A. expand/collapse author list , Davies J.K., Medigue C., Adler B.
PLoS ONE 3:E1607-E1607(2008) [PubMed: 18270594] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000777 Genomic DNA. Translation: ABZ93646.1.
RefSeqYP_001962224.1. NC_010842.1.

3D structure databases

ProteinModelPortalB0SF59.
ModBaseSearch...

Protein-protein interaction databases

STRINGB0SF59.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6386854.
GenomeReviewsGene locus LBF_1122 in contig CP000777_GR.
KEGGlbf:LBF_1122.
PATRIC22341243. VBILepBif95142_1189.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG512935.
OMAIVHAVEN.
ProtClustDBCLSK2336519.

Family and domain databases

InterProIPR000380. Topo_IA.
IPR003601. Topo_IA_2.
IPR013497. Topo_IA_cen.
IPR013824. Topo_IA_cen_sub1.
IPR013826. Topo_IA_cen_sub3.
IPR023405. Topo_IA_core_domain.
IPR003602. Topo_IA_DNA-bd.
IPR006171. Toprim_domain.
[Graphical view]
Gene3DG3DSA:1.10.460.10. Topo_IA_cen_sub1. 2 hits.
G3DSA:1.10.290.10. Topo_IA_cen_sub3. 1 hit.
KOK03168.
PANTHERPTHR11390. Topo_IA. 1 hit.
PfamPF01131. Topoisom_bac. 1 hit.
PF01751. Toprim. 1 hit.
[Graphical view]
PRINTSPR00417. PRTPISMRASEI.
SMARTSM00437. TOP1Ac. 1 hit.
SM00436. TOP1Bc. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMSSF56712. Topo_IA_core. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB0SF59_LEPBA
AccessionPrimary (citable) accession number: B0SF59
Entry history
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: December 14, 2011
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info