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Protein

Ribonuclease Y

Gene

rny

Organism
Finegoldia magna (strain ATCC 29328) (Peptostreptococcus magnus)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Endoribonuclease that initiates mRNA decay.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Endonuclease, Hydrolase, Nuclease

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease YUniRule annotation (EC:3.1.-.-UniRule annotation)
Short name:
RNase YUniRule annotation
Gene namesi
Name:rnyUniRule annotation
Ordered Locus Names:FMG_0752
OrganismiFinegoldia magna (strain ATCC 29328) (Peptostreptococcus magnus)
Taxonomic identifieri334413 [NCBI]
Taxonomic lineageiBacteriaFirmicutesTissierelliaTissierellalesPeptoniphilaceaeFinegoldia
Proteomesi
  • UP000001319 Componenti: Chromosome

Subcellular locationi

  • Cell membrane UniRule annotation; Single-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei4 – 24HelicalUniRule annotationAdd BLAST21

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003448731 – 513Ribonuclease YAdd BLAST513

Interactioni

Protein-protein interaction databases

STRINGi334413.FMG_0752.

Structurei

3D structure databases

ProteinModelPortaliB0S1D0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini203 – 288KHUniRule annotationAdd BLAST86
Domaini330 – 421HDUniRule annotationAdd BLAST92

Sequence similaritiesi

Belongs to the RNase Y family.UniRule annotation
Contains 1 HD domain.UniRule annotation
Contains 1 KH domain.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105E4Y. Bacteria.
COG1418. LUCA.
HOGENOMiHOG000221256.
KOiK18682.
OMAiYYARGQA.
OrthoDBiPOG091H00E1.

Family and domain databases

Gene3Di1.10.3210.10. 1 hit.
3.30.1370.10. 1 hit.
HAMAPiMF_00335. RNase_Y. 1 hit.
InterProiIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
IPR006675. HDIG_dom.
IPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR017705. Ribonuclease_Y.
IPR022711. RNase_Y_N.
[Graphical view]
PfamiPF12072. DUF3552. 1 hit.
PF01966. HD. 1 hit.
PF00013. KH_1. 1 hit.
[Graphical view]
SMARTiSM00471. HDc. 1 hit.
SM00322. KH. 1 hit.
[Graphical view]
SUPFAMiSSF54791. SSF54791. 1 hit.
TIGRFAMsiTIGR00277. HDIG. 1 hit.
TIGR03319. RNase_Y. 1 hit.
PROSITEiPS50084. KH_TYPE_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B0S1D0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTTTSLIIA ILAGILGIVI GFFFRKSLAE KKIRSAEDYA VKIIEDANKD
60 70 80 90 100
AETKKKELLV EAKDEIFKMK SDLDRENKSR LKEISRQEDR LNSKEENLER
110 120 130 140 150
KNASLEKKHK KLDSELKKAD DMQLKIQSLI DEKELELEKV AGLTSDEAKN
160 170 180 190 200
IVLERVKTET IREQAAIIKE IESKTKEESE KFAREIISTS IQRYAADQVA
210 220 230 240 250
ESTVSVVNLP NDDMKGRIIG REGRNIRAFE TLTGVDLIID DTPEAVVLSA
260 270 280 290 300
FDPVRREIAR IALEKLIVDG RIHPTRIEEM VEKARKDVDN TIREKGEEAC
310 320 330 340 350
DETNVHGLHP ELIKILGKLH YRTSYGQNVL KHSIEVSNIA GMLASELGVN
360 370 380 390 400
VKLAKRGGLL HDLGKAIDHE IEGPHVELGV NAAKRFKEPK DVINCIEAHH
410 420 430 440 450
GDVEPTCIES ILVQSADAIS AARPGARRES MENYIQRLEN LEQIANSFDG
460 470 480 490 500
IESSYAIQAG REIRIMVKPD VIDESSMVIL AKDVAHKIES ELEYPGQIKV
510
NVIRENRVSD YAK
Length:513
Mass (Da):57,650
Last modified:April 8, 2008 - v1
Checksum:iEB0BD1B9BDF80FDF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008971 Genomic DNA. Translation: BAG08170.1.
RefSeqiWP_012290605.1. NC_010376.1.

Genome annotation databases

EnsemblBacteriaiBAG08170; BAG08170; FMG_0752.
KEGGifma:FMG_0752.
PATRICi21887181. VBIFinMag33027_0957.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008971 Genomic DNA. Translation: BAG08170.1.
RefSeqiWP_012290605.1. NC_010376.1.

3D structure databases

ProteinModelPortaliB0S1D0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi334413.FMG_0752.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAG08170; BAG08170; FMG_0752.
KEGGifma:FMG_0752.
PATRICi21887181. VBIFinMag33027_0957.

Phylogenomic databases

eggNOGiENOG4105E4Y. Bacteria.
COG1418. LUCA.
HOGENOMiHOG000221256.
KOiK18682.
OMAiYYARGQA.
OrthoDBiPOG091H00E1.

Family and domain databases

Gene3Di1.10.3210.10. 1 hit.
3.30.1370.10. 1 hit.
HAMAPiMF_00335. RNase_Y. 1 hit.
InterProiIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
IPR006675. HDIG_dom.
IPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR017705. Ribonuclease_Y.
IPR022711. RNase_Y_N.
[Graphical view]
PfamiPF12072. DUF3552. 1 hit.
PF01966. HD. 1 hit.
PF00013. KH_1. 1 hit.
[Graphical view]
SMARTiSM00471. HDc. 1 hit.
SM00322. KH. 1 hit.
[Graphical view]
SUPFAMiSSF54791. SSF54791. 1 hit.
TIGRFAMsiTIGR00277. HDIG. 1 hit.
TIGR03319. RNase_Y. 1 hit.
PROSITEiPS50084. KH_TYPE_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRNY_FINM2
AccessioniPrimary (citable) accession number: B0S1D0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 22, 2008
Last sequence update: April 8, 2008
Last modified: November 2, 2016
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.