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B0RX10

- B0RX10_XANCB

UniProt

B0RX10 - B0RX10_XANCB

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Protein
Submitted name:

ATP-dependent DNA ligase, probable

Gene

xcc-b100_3013

Organism
Xanthomonas campestris pv. campestris (strain B100)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciXCAM509169:GHW4-3077-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase, probableImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:xcc-b100_3013Imported
OrganismiXanthomonas campestris pv. campestris (strain B100)Imported
Taxonomic identifieri509169 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000001188: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi509169.xccb100_3013.

Structurei

3D structure databases

ProteinModelPortaliB0RX10.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
KOiK01971.
OMAiKSASTHN.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B0RX10-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKRFAALYRT LDRSTGTLDK RAALVAYFRA APPLDAAWAL YLLAGGKVAS
60 70 80 90 100
ARMRIAASGE LREWIAEAAG IADWLVADSY DHVGDLAETL ALLLDDPASE
110 120 130 140 150
AVDVSLAEWI EQRLLPIANQ DVAVRKHCIV QAWRTLAFDE RLVFNKLLTG
160 170 180 190 200
ALRVGVSQRL VQQALAELSG VDIARIAQRM LGSWRPHATY VADLLTHEEL
210 220 230 240 250
PGDRQQPYPF FLASPLEADV ESLGAIDDWL LEWKWDGIRL QLLRRAGEAA
260 270 280 290 300
LWSRGEERLD GRFPEIEQAA MGLPDGTVID GELLAWQPEQ LLPMPFTALQ
310 320 330 340 350
TRIQRLKPGP KTLAAAPARV VAYDLLELDG EDLRERPLHA RRALLERVLA
360 370 380 390 400
TLADPRIIAS PLVHSTDWQA AAQVRLDARA RGVEGLMLKR ARSPYQSGRR
410 420 430 440 450
RGDWWKWKID PLTIDAVLLY AQAGHGRRST LYTDYTFGLW HDGALVPIAK
460 470 480 490 500
AYSGLDDTEI LQLDRWIRAN TTERFGPVRA VTPHHVFELG FEGVNRSTRH
510 520 530
KSGIAVRFPR ILRWRHDKPF AEADHLSSLQ ALAR
Length:534
Mass (Da):59,898
Last modified:April 8, 2008 - v1
Checksum:i9576CFB005534283
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM920689 Genomic DNA. Translation: CAP52376.1.
RefSeqiYP_001904418.1. NC_010688.1.

Genome annotation databases

EnsemblBacteriaiCAP52376; CAP52376; xcc-b100_3013.
GeneIDi6322985.
KEGGixca:xccb100_3013.
PATRICi24085950. VBIXanCam108527_3053.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM920689 Genomic DNA. Translation: CAP52376.1 .
RefSeqi YP_001904418.1. NC_010688.1.

3D structure databases

ProteinModelPortali B0RX10.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 509169.xccb100_3013.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAP52376 ; CAP52376 ; xcc-b100_3013 .
GeneIDi 6322985.
KEGGi xca:xccb100_3013.
PATRICi 24085950. VBIXanCam108527_3053.

Phylogenomic databases

eggNOGi COG1793.
KOi K01971.
OMAi KSASTHN.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci XCAM509169:GHW4-3077-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis."
    Vorhoelter F.-J., Schneiker S., Goesmann A., Krause L., Bekel T., Kaiser O., Linke B., Patschkowski T., Rueckert C., Schmid J., Sidhu V.K., Sieber V., Tauch A., Watt S.A., Weisshaar B., Becker A., Niehaus K., Puehler A.
    J. Biotechnol. 134:33-45(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: B100Imported.

Entry informationi

Entry nameiB0RX10_XANCB
AccessioniPrimary (citable) accession number: B0RX10
Entry historyi
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: October 1, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3