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B0RX10

- B0RX10_XANCB

UniProt

B0RX10 - B0RX10_XANCB

Protein
Submitted name:

ATP-dependent DNA ligase, probable

Gene

xcc-b100_3013

Organism
Xanthomonas campestris pv. campestris (strain B100)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 45 (01 Oct 2014)
      Sequence version 1 (08 Apr 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciXCAM509169:GHW4-3077-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase, probableImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:xcc-b100_3013Imported
    OrganismiXanthomonas campestris pv. campestris (strain B100)Imported
    Taxonomic identifieri509169 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
    ProteomesiUP000001188: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi509169.xccb100_3013.

    Structurei

    3D structure databases

    ProteinModelPortaliB0RX10.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    KOiK01971.
    OMAiKSASTHN.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B0RX10-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKRFAALYRT LDRSTGTLDK RAALVAYFRA APPLDAAWAL YLLAGGKVAS    50
    ARMRIAASGE LREWIAEAAG IADWLVADSY DHVGDLAETL ALLLDDPASE 100
    AVDVSLAEWI EQRLLPIANQ DVAVRKHCIV QAWRTLAFDE RLVFNKLLTG 150
    ALRVGVSQRL VQQALAELSG VDIARIAQRM LGSWRPHATY VADLLTHEEL 200
    PGDRQQPYPF FLASPLEADV ESLGAIDDWL LEWKWDGIRL QLLRRAGEAA 250
    LWSRGEERLD GRFPEIEQAA MGLPDGTVID GELLAWQPEQ LLPMPFTALQ 300
    TRIQRLKPGP KTLAAAPARV VAYDLLELDG EDLRERPLHA RRALLERVLA 350
    TLADPRIIAS PLVHSTDWQA AAQVRLDARA RGVEGLMLKR ARSPYQSGRR 400
    RGDWWKWKID PLTIDAVLLY AQAGHGRRST LYTDYTFGLW HDGALVPIAK 450
    AYSGLDDTEI LQLDRWIRAN TTERFGPVRA VTPHHVFELG FEGVNRSTRH 500
    KSGIAVRFPR ILRWRHDKPF AEADHLSSLQ ALAR 534
    Length:534
    Mass (Da):59,898
    Last modified:April 8, 2008 - v1
    Checksum:i9576CFB005534283
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM920689 Genomic DNA. Translation: CAP52376.1.
    RefSeqiYP_001904418.1. NC_010688.1.

    Genome annotation databases

    EnsemblBacteriaiCAP52376; CAP52376; xcc-b100_3013.
    GeneIDi6322985.
    KEGGixca:xccb100_3013.
    PATRICi24085950. VBIXanCam108527_3053.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM920689 Genomic DNA. Translation: CAP52376.1 .
    RefSeqi YP_001904418.1. NC_010688.1.

    3D structure databases

    ProteinModelPortali B0RX10.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 509169.xccb100_3013.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAP52376 ; CAP52376 ; xcc-b100_3013 .
    GeneIDi 6322985.
    KEGGi xca:xccb100_3013.
    PATRICi 24085950. VBIXanCam108527_3053.

    Phylogenomic databases

    eggNOGi COG1793.
    KOi K01971.
    OMAi KSASTHN.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci XCAM509169:GHW4-3077-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis."
      Vorhoelter F.-J., Schneiker S., Goesmann A., Krause L., Bekel T., Kaiser O., Linke B., Patschkowski T., Rueckert C., Schmid J., Sidhu V.K., Sieber V., Tauch A., Watt S.A., Weisshaar B., Becker A., Niehaus K., Puehler A.
      J. Biotechnol. 134:33-45(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: B100Imported.

    Entry informationi

    Entry nameiB0RX10_XANCB
    AccessioniPrimary (citable) accession number: B0RX10
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 8, 2008
    Last sequence update: April 8, 2008
    Last modified: October 1, 2014
    This is version 45 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3