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B0RX10 (B0RX10_XANCB) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL CAP52376.1
Gene names
Ordered Locus Names:xcc-b100_3013 EMBL CAP52376.1
OrganismXanthomonas campestris pv. campestris (strain B100) [Complete proteome] [HAMAP]
Taxonomic identifier509169 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas

Protein attributes

Sequence length534 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CAP52376.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B0RX10 [UniParc].

Last modified April 8, 2008. Version 1.
Checksum: 9576CFB005534283

FASTA53459,898
        10         20         30         40         50         60 
MKRFAALYRT LDRSTGTLDK RAALVAYFRA APPLDAAWAL YLLAGGKVAS ARMRIAASGE 

        70         80         90        100        110        120 
LREWIAEAAG IADWLVADSY DHVGDLAETL ALLLDDPASE AVDVSLAEWI EQRLLPIANQ 

       130        140        150        160        170        180 
DVAVRKHCIV QAWRTLAFDE RLVFNKLLTG ALRVGVSQRL VQQALAELSG VDIARIAQRM 

       190        200        210        220        230        240 
LGSWRPHATY VADLLTHEEL PGDRQQPYPF FLASPLEADV ESLGAIDDWL LEWKWDGIRL 

       250        260        270        280        290        300 
QLLRRAGEAA LWSRGEERLD GRFPEIEQAA MGLPDGTVID GELLAWQPEQ LLPMPFTALQ 

       310        320        330        340        350        360 
TRIQRLKPGP KTLAAAPARV VAYDLLELDG EDLRERPLHA RRALLERVLA TLADPRIIAS 

       370        380        390        400        410        420 
PLVHSTDWQA AAQVRLDARA RGVEGLMLKR ARSPYQSGRR RGDWWKWKID PLTIDAVLLY 

       430        440        450        460        470        480 
AQAGHGRRST LYTDYTFGLW HDGALVPIAK AYSGLDDTEI LQLDRWIRAN TTERFGPVRA 

       490        500        510        520        530 
VTPHHVFELG FEGVNRSTRH KSGIAVRFPR ILRWRHDKPF AEADHLSSLQ ALAR 

« Hide

References

[1]"The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis."
Vorhoelter F.-J., Schneiker S., Goesmann A., Krause L., Bekel T., Kaiser O., Linke B., Patschkowski T., Rueckert C., Schmid J., Sidhu V.K., Sieber V., Tauch A., Watt S.A., Weisshaar B., Becker A., Niehaus K., Puehler A.
J. Biotechnol. 134:33-45(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: B100 EMBL CAP52376.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM920689 Genomic DNA. Translation: CAP52376.1.
RefSeqYP_001904418.1. NC_010688.1.

3D structure databases

ProteinModelPortalB0RX10.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING509169.xccb100_3013.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAP52376; CAP52376; xcc-b100_3013.
GeneID6322985.
KEGGxca:xccb100_3013.
PATRIC24085950. VBIXanCam108527_3053.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
KOK01971.
OMAKSASTHN.
OrthoDBEOG6Q8HXT.

Enzyme and pathway databases

BioCycXCAM509169:GHW4-3077-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB0RX10_XANCB
AccessionPrimary (citable) accession number: B0RX10
Entry history
Integrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: May 14, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)