B0RV20 (B0RV20_XANCB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative endonuclease III EMBL CAP52089.1
EC=4.2.99.18 EMBL CAP52089.1

Gene names

Ordered Locus Names:

xcc-b100_2728

Organism

Xanthomonas campestris pv. campestris (strain B100) [Complete proteome] [HAMAP]

Taxonomic identifier

509169 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xanthomonas › Xanthomonas campestris › Xanthomonas campestris pv. campestris

Protein attributes

Sequence length	227 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Endonuclease EMBL CAP52089.1 Hydrolase Lyase EMBL CAP52089.1 Nuclease
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	base-excision repair Inferred from electronic annotation. Source: InterPro
Molecular_function	4 iron, 4 sulfur cluster binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA-(apurinic or apyrimidinic site) lyase activity Inferred from electronic annotation. Source: EC endonuclease activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B0RV20 [UniParc]. Last modified May 20, 2008. Version 1. Checksum: 59969F037273436F	FASTA	227	25,144
	10 20 30 40 50 60 MSSALSAPPP RRGSTLRKPE IQELFARLRE LNPHPTTELE YTTPFELLIA VLLSAQATDV 70 80 90 100 110 120 GVNKATRKLY PVANTPRDIL DLGEEGLKRY ISTIGLFNAK AKNVIATCRI LLERYGGEVP 130 140 150 160 170 180 HDRAALEALP GVGRKTANVV LNTAFGEPTM AVDTHIFRVA NRTGLAPGKD VRVVEDKLVK 190 200 210 220 VIPAEFLHDA HHWLILHGRY VCKARKPDCP NCVIHDLCRY RDKTVAA

References

[1]

"The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis." Vorhoelter F.-J., Schneiker S., Goesmann A., Krause L., Bekel T., Kaiser O., Linke B., Patschkowski T., Rueckert C., Schmid J., Sidhu V.K., Sieber V., Tauch A., Watt S.A., Weisshaar B., Becker A., Niehaus K., Puehler A. J. Biotechnol. 134:33-45(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: B100.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM920689 Genomic DNA. Translation: CAP52089.1.
RefSeq	YP_001904133.1. NC_010688.1.
3D structure databases
ProteinModelPortal	B0RV20.
SMR	B0RV20. Positions 16-223.
ModBase	Search...
Protein-protein interaction databases
STRING	509169.xccb100_2728.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAP52089; CAP52089; xcc-b100_2728.
GeneID	6322757.
KEGG	xca:xccb100_2728.
PATRIC	24085375. VBIXanCam108527_2768.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0177.
KO	K10773.
OMA	NNKSKHL.
ProtClustDB	CLSK446054.
Family and domain databases
Gene3D	1.10.1670.10. 1 hit. 1.10.340.30. 1 hit.
InterPro	IPR011257. DNA_glycosylase. IPR004036. Endonuclease-III_CS2. IPR005759. Endonuclease-III_Nth. IPR003651. Endouclease3_FeS-loop_motif. IPR003265. HhH-GPD_domain. IPR000445. HhH_motif. IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif. IPR023170. HTH_base_excis_C. [Graphical view]
Pfam	PF00633. HHH. 1 hit. PF00730. HhH-GPD. 1 hit. [Graphical view]
PIRSF	PIRSF001435. Nth. 1 hit.
SMART	SM00478. ENDO3c. 1 hit. SM00525. FES. 1 hit. SM00278. HhH1. 1 hit. [Graphical view]
SUPFAM	SSF48150. DNA_glycsylse. 1 hit.
TIGRFAMs	TIGR01083. nth. 1 hit.
PROSITE	PS01155. ENDONUCLEASE_III_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B0RV20_XANCB

Accession

Primary (citable) accession number: B0RV20

Entry history

Integrated into UniProtKB/TrEMBL:	May 20, 2008
Last sequence update:	May 20, 2008
Last modified:	May 1, 2013
This is version 37 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)