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Protein
Submitted name:

Lig2 protein

Gene

lig2

Organism
Xanthomonas campestris pv. campestris (strain B100)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciXCAM509169:GHW4-1907-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Lig2 proteinImported (EC:6.5.1.1Imported)
Gene namesi
Name:lig2Imported
Ordered Locus Names:xcc-b100_1871Imported
OrganismiXanthomonas campestris pv. campestris (strain B100)Imported
Taxonomic identifieri509169 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000001188 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi509169.xccb100_1871.

Structurei

3D structure databases

ProteinModelPortaliB0RRY9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
KOiK01971.
OMAiPHILGRP.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B0RRY9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLSEYRRKR SFDKTREPEP GKLLPQGQRA IFVVQLHHAS RRHYDFRLQV
60 70 80 90 100
GDALKSWAVP KGPSYDPAVK RMAVEVEDHP VDYASFEGEI PKGEYGGGHV
110 120 130 140 150
AQFDHGVWAT AGDPEAQLAK GHLRFELFGS KLKGGWHLVR SSKPARQPQW
160 170 180 190 200
LLFKEDDAYA GTLEADDLLA DVAAAPAEDV RRAGAGKAQR KALTTVPVPR
210 220 230 240 250
ARARNAWTNA ALKLTHARRG DIDDAAFAPQ LAKLGQAPPE GAQWVHEIKW
260 270 280 290 300
DGYRILATVT DGQVRLWSRN ALEWTDKIPD IRDAIQALNL RSARLDGELI
310 320 330 340 350
AGRGTKEDFN LLQATLSGER QVPLALAVFD LLHIDGVEIS EAPLRERKQL
360 370 380 390 400
LQQILANAPA GHLAYSSHVE GDGLEAFRVA GEQHFEGIIS KRADRPYRGG
410 420 430 440 450
RSDDWRKTKQ LASQEYAVVG YTAPKGSRTG FGSLLLATPD PQHGWLYVGR
460 470 480 490 500
VGSGFSDTLM QEVTQHLHGG GKRPTAHIPT EDTDLRGATW FAPRFVVEVF
510 520 530 540 550
YRGIGGQQLL RQASLKAVRL DKDIADLADS DMGDVSPAQA DVADTPARGR
560 570 580 590 600
KRANKQAPAQ GEPTLSSPTK LIYPDIRATK GDVWDYYHAV MDHLLPEIVG
610 620 630 640 650
RPLSIIRCPN GAEKPCFFQK HHTAGLERVS SVRLKEETGS NAYYLVVEDA
660 670 680 690 700
PGLLELVQFN ALEFHPWGSH AARPDMADRV VFDLDPGPDV PFAEVKRAAT
710 720 730 740 750
DIRKLLAQLE LESFLRVSGG KGLHVVVPLN PGCDWELTKR FAKGFADALA
760 770 780 790 800
QSEPDRFVAT ATKRFRNKRI FVDYLRNGRG ATAVASYSLR GRPGAPVALP
810 820 830 840
LPWSDLAKLH RANAFTLRDV PDKLRRRRKD PWADIAQIQQ NLARWADQG
Length:849
Mass (Da):93,976
Last modified:May 20, 2008 - v1
Checksum:iCAA30DAEA7367B3B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM920689 Genomic DNA. Translation: CAP51224.1.
RefSeqiWP_011037451.1. NC_010688.1.
YP_001903276.1. NC_010688.1.

Genome annotation databases

EnsemblBacteriaiCAP51224; CAP51224; xcc-b100_1871.
KEGGixca:xccb100_1871.
PATRICi24083620. VBIXanCam108527_1908.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM920689 Genomic DNA. Translation: CAP51224.1.
RefSeqiWP_011037451.1. NC_010688.1.
YP_001903276.1. NC_010688.1.

3D structure databases

ProteinModelPortaliB0RRY9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi509169.xccb100_1871.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAP51224; CAP51224; xcc-b100_1871.
KEGGixca:xccb100_1871.
PATRICi24083620. VBIXanCam108527_1908.

Phylogenomic databases

eggNOGiCOG3285.
KOiK01971.
OMAiPHILGRP.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciXCAM509169:GHW4-1907-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis."
    Vorholter F.J., Schneiker S., Goesmann A., Krause L., Bekel T., Kaiser O., Linke B., Patschkowski T., Ruckert C., Schmid J., Sidhu V.K., Sieber V., Tauch A., Watt S.A., Weisshaar B., Becker A., Niehaus K., Puhler A.
    J. Biotechnol. 134:33-45(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: B100Imported.

Entry informationi

Entry nameiB0RRY9_XANCB
AccessioniPrimary (citable) accession number: B0RRY9
Entry historyi
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: May 27, 2015
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.