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B0RRY9

- B0RRY9_XANCB

UniProt

B0RRY9 - B0RRY9_XANCB

Protein
Submitted name:

DNA ligase (ATP)

Gene

lig2

Organism
Xanthomonas campestris pv. campestris (strain B100)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 40 (01 Oct 2014)
      Sequence version 1 (20 May 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciXCAM509169:GHW4-1907-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
    Gene namesi
    Name:lig2Imported
    Ordered Locus Names:xcc-b100_1871Imported
    OrganismiXanthomonas campestris pv. campestris (strain B100)Imported
    Taxonomic identifieri509169 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
    ProteomesiUP000001188: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi509169.xccb100_1871.

    Structurei

    3D structure databases

    ProteinModelPortaliB0RRY9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    KOiK01971.
    OMAiRTETWAK.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B0RRY9-1 [UniParc]FASTAAdd to Basket

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    MSLSEYRRKR SFDKTREPEP GKLLPQGQRA IFVVQLHHAS RRHYDFRLQV    50
    GDALKSWAVP KGPSYDPAVK RMAVEVEDHP VDYASFEGEI PKGEYGGGHV 100
    AQFDHGVWAT AGDPEAQLAK GHLRFELFGS KLKGGWHLVR SSKPARQPQW 150
    LLFKEDDAYA GTLEADDLLA DVAAAPAEDV RRAGAGKAQR KALTTVPVPR 200
    ARARNAWTNA ALKLTHARRG DIDDAAFAPQ LAKLGQAPPE GAQWVHEIKW 250
    DGYRILATVT DGQVRLWSRN ALEWTDKIPD IRDAIQALNL RSARLDGELI 300
    AGRGTKEDFN LLQATLSGER QVPLALAVFD LLHIDGVEIS EAPLRERKQL 350
    LQQILANAPA GHLAYSSHVE GDGLEAFRVA GEQHFEGIIS KRADRPYRGG 400
    RSDDWRKTKQ LASQEYAVVG YTAPKGSRTG FGSLLLATPD PQHGWLYVGR 450
    VGSGFSDTLM QEVTQHLHGG GKRPTAHIPT EDTDLRGATW FAPRFVVEVF 500
    YRGIGGQQLL RQASLKAVRL DKDIADLADS DMGDVSPAQA DVADTPARGR 550
    KRANKQAPAQ GEPTLSSPTK LIYPDIRATK GDVWDYYHAV MDHLLPEIVG 600
    RPLSIIRCPN GAEKPCFFQK HHTAGLERVS SVRLKEETGS NAYYLVVEDA 650
    PGLLELVQFN ALEFHPWGSH AARPDMADRV VFDLDPGPDV PFAEVKRAAT 700
    DIRKLLAQLE LESFLRVSGG KGLHVVVPLN PGCDWELTKR FAKGFADALA 750
    QSEPDRFVAT ATKRFRNKRI FVDYLRNGRG ATAVASYSLR GRPGAPVALP 800
    LPWSDLAKLH RANAFTLRDV PDKLRRRRKD PWADIAQIQQ NLARWADQG 849
    Length:849
    Mass (Da):93,976
    Last modified:May 20, 2008 - v1
    Checksum:iCAA30DAEA7367B3B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM920689 Genomic DNA. Translation: CAP51224.1.
    RefSeqiYP_001903276.1. NC_010688.1.

    Genome annotation databases

    EnsemblBacteriaiCAP51224; CAP51224; xcc-b100_1871.
    GeneIDi6322025.
    KEGGixca:xccb100_1871.
    PATRICi24083620. VBIXanCam108527_1908.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM920689 Genomic DNA. Translation: CAP51224.1 .
    RefSeqi YP_001903276.1. NC_010688.1.

    3D structure databases

    ProteinModelPortali B0RRY9.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 509169.xccb100_1871.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAP51224 ; CAP51224 ; xcc-b100_1871 .
    GeneIDi 6322025.
    KEGGi xca:xccb100_1871.
    PATRICi 24083620. VBIXanCam108527_1908.

    Phylogenomic databases

    eggNOGi COG3285.
    KOi K01971.
    OMAi RTETWAK.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci XCAM509169:GHW4-1907-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis."
      Vorhoelter F.-J., Schneiker S., Goesmann A., Krause L., Bekel T., Kaiser O., Linke B., Patschkowski T., Rueckert C., Schmid J., Sidhu V.K., Sieber V., Tauch A., Watt S.A., Weisshaar B., Becker A., Niehaus K., Puehler A.
      J. Biotechnol. 134:33-45(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: B100Imported.

    Entry informationi

    Entry nameiB0RRY9_XANCB
    AccessioniPrimary (citable) accession number: B0RRY9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 20, 2008
    Last sequence update: May 20, 2008
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3