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B0RRY9 (B0RRY9_XANCB) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase (ATP) EMBL CAP51224.1
EC=6.5.1.1 EMBL CAP51224.1
Gene names
Name:lig2 EMBL CAP51224.1
Ordered Locus Names:xcc-b100_1871
OrganismXanthomonas campestris pv. campestris (strain B100) [Complete proteome] [HAMAP]
Taxonomic identifier509169 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xanthomonas ›

Protein attributes

Sequence length849 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CAP51224.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B0RRY9 [UniParc].

Last modified May 20, 2008. Version 1.
Checksum: CAA30DAEA7367B3B

FASTA84993,976
        10         20         30         40         50         60 
MSLSEYRRKR SFDKTREPEP GKLLPQGQRA IFVVQLHHAS RRHYDFRLQV GDALKSWAVP 

        70         80         90        100        110        120 
KGPSYDPAVK RMAVEVEDHP VDYASFEGEI PKGEYGGGHV AQFDHGVWAT AGDPEAQLAK 

       130        140        150        160        170        180 
GHLRFELFGS KLKGGWHLVR SSKPARQPQW LLFKEDDAYA GTLEADDLLA DVAAAPAEDV 

       190        200        210        220        230        240 
RRAGAGKAQR KALTTVPVPR ARARNAWTNA ALKLTHARRG DIDDAAFAPQ LAKLGQAPPE 

       250        260        270        280        290        300 
GAQWVHEIKW DGYRILATVT DGQVRLWSRN ALEWTDKIPD IRDAIQALNL RSARLDGELI 

       310        320        330        340        350        360 
AGRGTKEDFN LLQATLSGER QVPLALAVFD LLHIDGVEIS EAPLRERKQL LQQILANAPA 

       370        380        390        400        410        420 
GHLAYSSHVE GDGLEAFRVA GEQHFEGIIS KRADRPYRGG RSDDWRKTKQ LASQEYAVVG 

       430        440        450        460        470        480 
YTAPKGSRTG FGSLLLATPD PQHGWLYVGR VGSGFSDTLM QEVTQHLHGG GKRPTAHIPT 

       490        500        510        520        530        540 
EDTDLRGATW FAPRFVVEVF YRGIGGQQLL RQASLKAVRL DKDIADLADS DMGDVSPAQA 

       550        560        570        580        590        600 
DVADTPARGR KRANKQAPAQ GEPTLSSPTK LIYPDIRATK GDVWDYYHAV MDHLLPEIVG 

       610        620        630        640        650        660 
RPLSIIRCPN GAEKPCFFQK HHTAGLERVS SVRLKEETGS NAYYLVVEDA PGLLELVQFN 

       670        680        690        700        710        720 
ALEFHPWGSH AARPDMADRV VFDLDPGPDV PFAEVKRAAT DIRKLLAQLE LESFLRVSGG 

       730        740        750        760        770        780 
KGLHVVVPLN PGCDWELTKR FAKGFADALA QSEPDRFVAT ATKRFRNKRI FVDYLRNGRG 

       790        800        810        820        830        840 
ATAVASYSLR GRPGAPVALP LPWSDLAKLH RANAFTLRDV PDKLRRRRKD PWADIAQIQQ 


NLARWADQG

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References

[1]"The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis."
Vorhoelter F.-J., Schneiker S., Goesmann A., Krause L., Bekel T., Kaiser O., Linke B., Patschkowski T., Rueckert C., Schmid J., Sidhu V.K., Sieber V., Tauch A., Watt S.A., Weisshaar B., Becker A., Niehaus K., Puehler A.
J. Biotechnol. 134:33-45(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: B100.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AM920689 Genomic DNA. Translation: CAP51224.1.
RefSeqYP_001903276.1. NC_010688.1.

3D structure databases

ProteinModelPortalB0RRY9.
ModBaseSearch...

Protein-protein interaction databases

STRING509169.xccb100_1871.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAP51224; CAP51224; xcc-b100_1871.
GeneID6322025.
KEGGxca:xccb100_1871.
PATRIC24083620. VBIXanCam108527_1908.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
KOK01971.
OMAWHLVRSG.
ProtClustDBCLSK299585.

Enzyme and pathway databases

BioCycXCAM509169:GHW4-1907-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB0RRY9_XANCB
AccessionPrimary (citable) accession number: B0RRY9
Entry history
Integrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: May 29, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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